| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF472896 |
Definition |
Mycobacterium phage JoshKayV, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
53366 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
63 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASZ75435.1 | MF472896_p95 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 51029 | 51739 |
| ASZ75394.1 | MF472896_p53 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 36364 | 36567 |
| ASZ75352.1 | MF472896_p11 | holin | phrog_526 | holin | lysis | 1 | 6385 | 6825 |
| ASZ75378.1 | MF472896_p37 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 28065 | 28235 |
| ASZ75362.1 | MF472896_p21 | head-to-tail connector | phrog_320 | head closure Hc1 | connector | 1 | 14362 | 14730 |
| ASZ75426.1 | MF472896_p86 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48952 | 49086 |
| ASZ75419.1 | MF472896_p79 | hypothetical protein | phrog_8490 | unknown function | unknown function | -1 | 46850 | 46990 |
| ASZ75344.1 | MF472896_p3 | VIP2 toxin | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1332 | 2264 |
| ASZ75405.1 | MF472896_p65 | helix-turn-helix DNA binding protein | phrog_1123 | unknown function | unknown function | -1 | 41295 | 41552 |
| ASZ75390.1 | MF472896_p49 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 32752 | 32961 |
| ASZ75354.1 | MF472896_p13 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7836 | 9626 |
| ASZ75351.1 | MF472896_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 5075 | 6388 |
| ASZ75345.1 | MF472896_p4 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 2261 | 2566 |
| ASZ75434.1 | MF472896_p94 | hypothetical protein | phrog_6255 | unknown function | unknown function | -1 | 50772 | 51020 |
| ASZ75438.1 | MF472896_p61 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39365 | 39766 |
| ASZ75380.1 | MF472896_p39 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 28432 | 28605 |
| ASZ75428.1 | MF472896_p88 | hypothetical protein | phrog_9713 | unknown function | unknown function | -1 | 49390 | 49464 |
| ASZ75366.1 | MF472896_p26 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16204 | 16611 |
| ASZ75427.1 | MF472896_p87 | hypothetical protein | phrog_3718 | unknown function | unknown function | -1 | 49097 | 49393 |
| ASZ75355.1 | MF472896_p14 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9626 | 11101 |
| ASZ75383.1 | MF472896_p42 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 29245 | 29529 |
| ASZ75402.1 | MF472896_p62 | hypothetical protein | phrog_1370 | unknown function | unknown function | -1 | 39744 | 39875 |
| ASZ75412.1 | MF472896_p72 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43661 | 43858 |
| ASZ75367.1 | MF472896_p25 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16204 | 17036 |
| ASZ75399.1 | MF472896_p58 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38325 | 38828 |
| ASZ75384.1 | MF472896_p43 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 29529 | 29756 |
| ASZ75377.1 | MF472896_p36 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 27589 | 27972 |
| ASZ75382.1 | MF472896_p41 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 28982 | 29245 |
| ASZ75407.1 | MF472896_p67 | hypothetical protein | phrog_5101 | unknown function | unknown function | -1 | 41919 | 42218 |
| ASZ75395.1 | MF472896_p54 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36564 | 36737 |
| ASZ75410.1 | MF472896_p70 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43202 | 43441 |
| ASZ75422.1 | MF472896_p82 | hypothetical protein | phrog_3351 | unknown function | unknown function | -1 | 47525 | 47758 |
| ASZ75420.1 | MF472896_p80 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 46987 | 47259 |
| ASZ75358.1 | MF472896_p17 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12589 | 13545 |
| ASZ75346.1 | MF472896_p5 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2563 | 2859 |
| ASZ75432.1 | MF472896_p92 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 50411 | 50578 |
| ASZ75437.1 | MF472896_p97 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51846 | 52139 |
| ASZ75411.1 | MF472896_p71 | hypothetical protein | phrog_666 | unknown function | unknown function | -1 | 43470 | 43664 |
| ASZ75381.1 | MF472896_p40 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 28602 | 28985 |
| ASZ75343.1 | MF472896_p2 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 661 | 1428 |
| ASZ75414.1 | MF472896_p74 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44811 | 45230 |
| ASZ75429.1 | MF472896_p89 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 49461 | 49922 |
| ASZ75368.1 | MF472896_p27 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17026 | 19569 |
| ASZ75436.1 | MF472896_p96 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51739 | 51822 |
| ASZ75386.1 | MF472896_p45 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 30005 | 31792 |
| ASZ75408.1 | MF472896_p68 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42252 | 43058 |
| ASZ75357.1 | MF472896_p16 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 12035 | 12559 |
| ASZ75403.1 | MF472896_p63 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39901 | 40374 |
| ASZ75413.1 | MF472896_p73 | RecB family endonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43909 | 44814 |
| ASZ75349.1 | MF472896_p8 | hypothetical protein | phrog_5972 | unknown function | unknown function | 1 | 4521 | 4775 |
| ASZ75392.1 | MF472896_p51 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 33765 | 34313 |
| ASZ75347.1 | MF472896_p6 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2899 | 3369 |
| ASZ75370.1 | MF472896_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20603 | 22375 |
| ASZ75379.1 | MF472896_p38 | hypothetical protein | phrog_9463 | unknown function | unknown function | -1 | 28235 | 28432 |
| ASZ75371.1 | MF472896_p30 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 22392 | 22838 |
| ASZ75433.1 | MF472896_p93 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 50575 | 50772 |
| ASZ75369.1 | MF472896_p28 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19590 | 20606 |
| ASZ75421.1 | MF472896_p81 | hypothetical protein | phrog_1875 | unknown function | unknown function | -1 | 47256 | 47528 |
| ASZ75373.1 | MF472896_p32 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 23180 | 25381 |
| ASZ75396.1 | MF472896_p55 | helix-turn-helix DNA binding protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36737 | 37405 |
| ASZ75417.1 | MF472896_p77 | hypothetical protein | phrog_4294 | unknown function | unknown function | -1 | 46427 | 46588 |
| ASZ75374.1 | MF472896_p33 | hypothetical protein | phrog_13711 | unknown function | unknown function | 1 | 25432 | 25602 |
| ASZ75400.1 | MF472896_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38825 | 38905 |
| ASZ75375.1 | MF472896_p34 | integrase | phrog_1 | integrase | integration and excision | -1 | 25599 | 26714 |
| ASZ75401.1 | MF472896_p60 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38905 | 39537 |
| ASZ75398.1 | MF472896_p57 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37558 | 38328 |
| ASZ75360.1 | MF472896_p19 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13800 | 14177 |
| ASZ75342.1 | MF472896_p1 | hypothetical protein | phrog_7736 | unknown function | unknown function | 1 | 329 | 442 |
| ASZ75404.1 | MF472896_p64 | hypothetical protein | phrog_789 | esterase/lipase | other | -1 | 40459 | 41295 |
| ASZ75418.1 | MF472896_p78 | hypothetical protein | phrog_4569 | unknown function | unknown function | -1 | 46588 | 46848 |
| ASZ75424.1 | MF472896_p84 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47886 | 48197 |
| ASZ75385.1 | MF472896_p44 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 29756 | 29974 |
| ASZ75350.1 | MF472896_p9 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 4917 | 5075 |
| ASZ75391.1 | MF472896_p50 | hypothetical protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 32963 | 33688 |
| ASZ75430.1 | MF472896_p90 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49948 | 50301 |
| ASZ75388.1 | MF472896_p47 | hypothetical protein | phrog_3812 | unknown function | unknown function | -1 | 32151 | 32333 |
| ASZ75365.1 | MF472896_p24 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15499 | 16092 |
| ASZ75409.1 | MF472896_p69 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 43068 | 43205 |
| ASZ75361.1 | MF472896_p20 | hypothetical protein | phrog_830 | head-tail connector protein | connector | 1 | 14174 | 14365 |
| ASZ75363.1 | MF472896_p22 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14730 | 15065 |
| ASZ75425.1 | MF472896_p85 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 48197 | 48952 |
| ASZ75416.1 | MF472896_p76 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 46115 | 46282 |
| ASZ75393.1 | MF472896_p52 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 34310 | 36364 |
| ASZ75415.1 | MF472896_p75 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45292 | 45870 |
| ASZ75387.1 | MF472896_p46 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 31801 | 32154 |
| ASZ75356.1 | MF472896_p15 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 11098 | 11982 |
| ASZ75359.1 | MF472896_p18 | head-to-tail connector | phrog_748 | head-tail connector protein | connector | 1 | 13615 | 13797 |
| ASZ75376.1 | MF472896_p35 | hypothetical protein | phrog_733 | excisionase | integration and excision | 1 | 27108 | 27542 |
| ASZ75372.1 | MF472896_p31 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 22835 | 23179 |
| ASZ75353.1 | MF472896_p12 | lysin B | phrog_102 | endolysin | lysis | 1 | 6822 | 7814 |
| ASZ75397.1 | MF472896_p56 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 37405 | 37554 |
| ASZ75406.1 | MF472896_p66 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41552 | 41782 |
| ASZ75423.1 | MF472896_p83 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 47758 | 47886 |
| ASZ75431.1 | MF472896_p91 | hypothetical protein | phrog_12399 | unknown function | unknown function | -1 | 50298 | 50411 |
| ASZ75348.1 | MF472896_p7 | hypothetical protein | phrog_1260 | minor tail protein | tail | 1 | 3454 | 4419 |
| ASZ75364.1 | MF472896_p23 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 15062 | 15478 |
| ASZ75389.1 | MF472896_p48 | hypothetical protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32333 | 32755 |