| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF541409 |
Definition |
Streptomyces phage Oliynyk, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Likavirus; unclassified Likavirus. |
DB of origin |
NUCCORE |
Length |
49976 |
Host Name |
Streptomyces xanthochromogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
75 |
%GC |
65.93 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE85369.1 | MF541409_p39 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 27909 | 28343 |
| ATE85338.1 | MF541409_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 4235 | 5683 |
| ATE85378.1 | MF541409_p48 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 31960 | 34050 |
| ATE85404.1 | MF541409_p74 | hypothetical protein | phrog_4485 | unknown function | unknown function | -1 | 48399 | 48545 |
| ATE85389.1 | MF541409_p59 | deoxynucleoside monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 41900 | 42490 |
| ATE85341.1 | MF541409_p11 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 7414 | 8487 |
| ATE85337.1 | MF541409_p7 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2562 | 4208 |
| ATE85376.1 | MF541409_p46 | helix-turn-helix DNA binding domain protein | phrog_3512 | sigma factor | transcription regulation | 1 | 31105 | 31503 |
| ATE85380.1 | MF541409_p50 | integrase | phrog_95 | integrase | integration and excision | 1 | 34372 | 35694 |
| ATE85394.1 | MF541409_p64 | hypothetical protein | phrog_4785 | unknown function | unknown function | -1 | 43813 | 44100 |
| ATE85339.1 | MF541409_p9 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 5680 | 6792 |
| ATE85333.1 | MF541409_p3 | hypothetical protein | phrog_35921 | unknown function | unknown function | 1 | 1267 | 1542 |
| ATE85381.1 | MF541409_p51 | hypothetical protein | phrog_9533 | unknown function | unknown function | -1 | 35843 | 36046 |
| ATE85356.1 | MF541409_p26 | hypothetical protein | phrog_3534 | unknown function | unknown function | 1 | 21029 | 21313 |
| ATE85386.1 | MF541409_p56 | hypothetical protein | phrog_3424 | unknown function | unknown function | -1 | 40723 | 40959 |
| ATE85355.1 | MF541409_p25 | hypothetical protein | phrog_988 | tail protein | tail | 1 | 19686 | 20960 |
| ATE85354.1 | MF541409_p24 | hypothetical protein | phrog_18853 | unknown function | unknown function | 1 | 19202 | 19615 |
| ATE85340.1 | MF541409_p10 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6796 | 7344 |
| ATE85402.1 | MF541409_p72 | hypothetical protein | phrog_4313 | unknown function | unknown function | -1 | 46950 | 47768 |
| ATE85363.1 | MF541409_p33 | hypothetical protein | phrog_3912 | unknown function | unknown function | 1 | 24989 | 25489 |
| ATE85370.1 | MF541409_p40 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28177 | 28842 |
| ATE85335.1 | MF541409_p5 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 1854 | 2102 |
| ATE85347.1 | MF541409_p18 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 11113 | 11436 |
| ATE85385.1 | MF541409_p55 | DNA polymerase III alpha | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 37247 | 40726 |
| ATE85405.1 | MF541409_p75 | hypothetical protein | phrog_2563 | unknown function | unknown function | -1 | 48642 | 49028 |
| ATE85390.1 | MF541409_p60 | hypothetical protein | phrog_5209 | unknown function | unknown function | -1 | 42487 | 42798 |
| ATE85403.1 | MF541409_p73 | hypothetical protein | phrog_3994 | unknown function | unknown function | -1 | 47882 | 48307 |
| ATE85342.1 | MF541409_p12 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8558 | 9010 |
| ATE85395.1 | MF541409_p65 | hypothetical protein | phrog_4867 | unknown function | unknown function | -1 | 44219 | 44584 |
| ATE85334.1 | MF541409_p4 | hypothetical protein | phrog_3555 | unknown function | unknown function | 1 | 1618 | 1848 |
| ATE85371.1 | MF541409_p41 | hypothetical protein | phrog_4022 | unknown function | unknown function | 1 | 28839 | 29195 |
| ATE85400.1 | MF541409_p70 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 46267 | 46674 |
| ATE85398.1 | MF541409_p68 | hypothetical protein | phrog_4239 | unknown function | unknown function | -1 | 45479 | 45898 |
| ATE85373.1 | MF541409_p43 | hypothetical protein | phrog_3979 | unknown function | unknown function | 1 | 29344 | 29541 |
| ATE85364.1 | MF541409_p34 | hypothetical protein | phrog_1288 | unknown function | unknown function | 1 | 25549 | 25986 |
| ATE85344.1 | MF541409_p14 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 9342 | 9740 |
| ATE85387.1 | MF541409_p57 | hypothetical protein | phrog_3965 | unknown function | unknown function | -1 | 40973 | 41404 |
| ATE85345.1 | MF541409_p15 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9740 | 10243 |
| ATE85367.1 | MF541409_p37 | holliday junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 27411 | 27773 |
| ATE85331.1 | MF541409_p1 | hypothetical protein | phrog_4207 | unknown function | unknown function | -1 | 91 | 297 |
| ATE85361.1 | MF541409_p31 | hypothetical protein | phrog_5250 | unknown function | unknown function | 1 | 23519 | 23887 |
| ATE85372.1 | MF541409_p42 | hypothetical protein | phrog_6217 | unknown function | unknown function | 1 | 29192 | 29347 |
| ATE85384.1 | MF541409_p54 | hypothetical protein | phrog_5971 | unknown function | unknown function | -1 | 37028 | 37165 |
| ATE85332.1 | MF541409_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 746 | 1060 |
| ATE85379.1 | MF541409_p49 | DNA bridging protein | phrog_6509 | Lsr2-like DNA bridging protein | DNA, RNA and nucleotide metabolism | 1 | 34097 | 34315 |
| ATE85366.1 | MF541409_p36 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 26587 | 27342 |
| ATE85346.1 | MF541409_p16 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 10258 | 11001 |
| ATE85365.1 | MF541409_p35 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 26042 | 26530 |
| ATE85368.1 | MF541409_p38 | hypothetical protein | phrog_4673 | unknown function | unknown function | 1 | 27770 | 27922 |
| ATE85343.1 | MF541409_p13 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 9007 | 9342 |
| ATE85401.1 | MF541409_p71 | hypothetical protein | phrog_4275 | unknown function | unknown function | -1 | 46703 | 46837 |
| ATE85348.1 | MF541409_p17 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 11113 | 11828 |
| ATE85382.1 | MF541409_p52 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 36043 | 36756 |
| ATE85352.1 | MF541409_p22 | hypothetical protein | phrog_1276 | unknown function | unknown function | 1 | 17235 | 17519 |
| ATE85392.1 | MF541409_p62 | hypothetical protein | phrog_11825 | unknown function | unknown function | -1 | 43069 | 43257 |
| ATE85393.1 | MF541409_p63 | hypothetical protein | phrog_2650 | unknown function | unknown function | -1 | 43269 | 43721 |
| ATE85377.1 | MF541409_p47 | hypothetical protein | phrog_4123 | unknown function | unknown function | 1 | 31500 | 31865 |
| ATE85399.1 | MF541409_p69 | hypothetical protein | phrog_6619 | unknown function | unknown function | -1 | 46019 | 46270 |
| ATE85391.1 | MF541409_p61 | hypothetical protein | phrog_3991 | unknown function | unknown function | -1 | 42795 | 43076 |
| ATE85375.1 | MF541409_p45 | hypothetical protein | phrog_1340 | unknown function | unknown function | 1 | 30752 | 31108 |
| ATE85350.1 | MF541409_p20 | minor tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 15156 | 16013 |
| ATE85359.1 | MF541409_p29 | hypothetical protein | phrog_4061 | unknown function | unknown function | -1 | 22604 | 22864 |
| ATE85374.1 | MF541409_p44 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 29538 | 30725 |
| ATE85353.1 | MF541409_p23 | hypothetical protein | phrog_4013 | unknown function | unknown function | 1 | 17521 | 19164 |
| ATE85362.1 | MF541409_p32 | exonuclease | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 23884 | 24861 |
| ATE85360.1 | MF541409_p30 | immunity repressor | phrog_3929 | transcriptional repressor | transcription regulation | 1 | 22949 | 23401 |
| ATE85357.1 | MF541409_p27 | endolysin | phrog_1493 | endolysin | lysis | 1 | 21344 | 22285 |
| ATE85351.1 | MF541409_p21 | minor tail protein | phrog_538 | minor tail protein | tail | 1 | 16017 | 17219 |
| ATE85396.1 | MF541409_p66 | HNH endonuclease | phrog_4842 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 44676 | 45140 |
| ATE85349.1 | MF541409_p19 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 11832 | 15152 |
| ATE85383.1 | MF541409_p53 | hypothetical protein | phrog_4071 | unknown function | unknown function | -1 | 36753 | 37025 |
| ATE85397.1 | MF541409_p67 | hypothetical protein | phrog_3908 | unknown function | unknown function | -1 | 45249 | 45476 |
| ATE85336.1 | MF541409_p6 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2116 | 2541 |
| ATE85358.1 | MF541409_p28 | hypothetical protein | phrog_4092 | unknown function | unknown function | 1 | 22288 | 22548 |
| ATE85388.1 | MF541409_p58 | hypothetical protein | phrog_4024 | unknown function | unknown function | -1 | 41478 | 41855 |