Genomic map of Clostridioides phage LIBA6276 (MF547662)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF547662
Definition
Clostridioides phage LIBA6276, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
134243
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
172
%GC
26.14
Number of singletons
2
Number of paralogs
10

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AUO78362.1 MF547662_p144 hypothetical protein phrog_10897 unknown function unknown function -1 114801 115133
AUO78373.1 MF547662_p155 hypothetical protein phrog_14265 unknown function unknown function -1 120518 120658
AUO78278.1 MF547662_p60 RuvABC resolvasome endonuclease subunit phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 64275 64769
AUO78313.1 MF547662_p95 hypothetical protein phrog_9445 unknown function unknown function -1 89670 89804
AUO78294.1 MF547662_p76 hypothetical protein phrog_22039 unknown function unknown function -1 74158 74460
AUO78262.1 MF547662_p44 hypothetical protein phrog_1243 unknown function unknown function 1 51159 51341
AUO78356.1 MF547662_p138 death on curing protein phrog_577 Doc-like toxin moron, auxiliary metabolic gene and host takeover -1 109749 110117
AUO78276.1 MF547662_p58 transposase phrog_5749 transposase integration and excision 1 62163 63473
AUO78302.1 MF547662_p84 hypothetical protein phrog_5479 unknown function unknown function -1 84455 84625
AUO78383.1 MF547662_p165 hypothetical protein phrog_28443 unknown function unknown function 1 127702 127896
AUO78318.1 MF547662_p100 hypothetical protein phrog_29310 unknown function unknown function -1 91401 91610
AUO78305.1 MF547662_p87 hypothetical protein phrog_11508 unknown function unknown function -1 85929 86084
AUO78307.1 MF547662_p89 hypothetical protein phrog_9653 unknown function unknown function -1 86519 87640
AUO78374.1 MF547662_p156 hypothetical protein phrog_26646 unknown function unknown function -1 120730 120987
AUO78366.1 MF547662_p148 hypothetical protein phrog_12818 unknown function unknown function -1 117196 117312
AUO78355.1 MF547662_p137 site-specific tyrosine recombinase phrog_1 integrase integration and excision -1 108547 109518
AUO78309.1 MF547662_p91 hypothetical protein phrog_11322 unknown function unknown function -1 88027 88278
AUO78230.1 MF547662_p12 hypothetical protein phrog_9724 unknown function unknown function 1 9995 10798
AUO78339.1 MF547662_p121 hypothetical protein phrog_2475 unknown function unknown function -1 100206 101216
AUO78321.1 MF547662_p103 hypothetical protein phrog_35003 unknown function unknown function -1 92079 92441
AUO78246.1 MF547662_p28 hypothetical protein phrog_13544 unknown function unknown function 1 25869 26579
AUO78331.1 MF547662_p113 peptidyl-tRNA hydrolase phrog_1866 unknown function unknown function -1 97089 97469
AUO78241.1 MF547662_p23 hypothetical protein phrog_13585 unknown function unknown function 1 18681 18839
AUO78388.1 MF547662_p170 hypothetical protein phrog_1491 tail fiber protein tail 1 131652 132269
AUO78301.1 MF547662_p83 hypothetical protein phrog_2367 unknown function unknown function -1 83490 84335
AUO78308.1 MF547662_p90 hypothetical protein phrog_9079 unknown function unknown function -1 87719 88027
AUO78292.1 MF547662_p74 ribonucleotide-diphosphate reductase phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 70526 72706
AUO78346.1 MF547662_p128 hypothetical protein phrog_31316 unknown function unknown function -1 104760 105086
AUO78277.1 MF547662_p59 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 63778 64251
AUO78284.1 MF547662_p66 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 67280 67945
AUO78365.1 MF547662_p147 hypothetical protein phrog_6775 unknown function unknown function -1 116052 117134
AUO78358.1 MF547662_p140 hypothetical protein phrog_2727 unknown function unknown function -1 110364 110936
AUO78336.1 MF547662_p118 hypothetical protein phrog_24170 unknown function unknown function -1 98862 99230
AUO78303.1 MF547662_p85 hypothetical protein phrog_6721 unknown function unknown function -1 84648 85313
AUO78386.1 MF547662_p168 hypothetical protein phrog_30164 unknown function unknown function 1 129900 130571
AUO78283.1 MF547662_p65 hypothetical protein phrog_9257 unknown function unknown function -1 67016 67270
AUO78270.1 MF547662_p52 cell surface protein phrog_8822 unknown function unknown function 1 55693 56955
AUO78234.1 MF547662_p16 hypothetical protein phrog_11057 unknown function unknown function 1 13008 13445
AUO78379.1 MF547662_p161 hypothetical protein phrog_35171 unknown function unknown function 1 124991 125128
AUO78327.1 MF547662_p109 hypothetical protein phrog_10778 unknown function unknown function -1 95522 95872
AUO78378.1 MF547662_p160 hypothetical protein phrog_5553 unknown function unknown function -1 123054 123422
AUO78220.1 MF547662_p2 terminase-like family protein phrog_2 terminase large subunit head and packaging 1 845 2620
AUO78306.1 MF547662_p88 hypothetical protein phrog_9910 unknown function unknown function -1 86094 86525
AUO78350.1 MF547662_p132 YopX protein phrog_98 unknown function unknown function -1 106074 106487
AUO78375.1 MF547662_p157 PemI phrog_2329 unknown function unknown function -1 121117 121305
AUO78325.1 MF547662_p107 hypothetical protein phrog_33773 unknown function unknown function -1 94484 94843
AUO78371.1 MF547662_p153 hypothetical protein phrog_12348 unknown function unknown function -1 119906 120172
AUO78328.1 MF547662_p110 hypothetical protein phrog_9643 unknown function unknown function -1 96003 96284
AUO78228.1 MF547662_p10 hypothetical protein phrog_10703 unknown function unknown function 1 8440 9486
AUO78272.1 MF547662_p54 hypothetical protein phrog_738 unknown function unknown function -1 57552 57683
AUO78266.1 MF547662_p48 hypothetical protein phrog_9316 holin lysis 1 53175 53486
AUO78324.1 MF547662_p106 release factor H-coupled RctB family protein phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism -1 93178 94431
AUO78290.1 MF547662_p72 hypothetical protein phrog_16211 unknown function unknown function -1 69970 70101
AUO78293.1 MF547662_p75 DGQHR domain protein phrog_5732 unknown function unknown function -1 72848 73987
AUO78264.1 MF547662_p46 cell surface protein phrog_8124 endolysin lysis 1 52294 52911
AUO78384.1 MF547662_p166 luxR family regulatory protein phrog_5767 sigma factor transcription regulation 1 127856 129058
AUO78224.1 MF547662_p6 hypothetical protein phrog_4147 unknown function unknown function 1 5670 6158
AUO78340.1 MF547662_p122 hypothetical protein phrog_26717 unknown function unknown function -1 101228 101416
AUO78281.1 MF547662_p63 DNA modification methylase phrog_67 DNA methyltransferase other -1 65744 66553
AUO78295.1 MF547662_p77 DNA polymerase III phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 74573 77905
AUO78300.1 MF547662_p82 ERF family protein phrog_2324 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 82874 83449
AUO78280.1 MF547662_p62 hypothetical protein phrog_1233 unknown function unknown function -1 65347 65709
AUO78360.1 MF547662_p142 hypothetical protein singleton unknown function unknown function -1 113578 114102
AUO78273.1 MF547662_p55 hypothetical protein phrog_9827 unknown function unknown function -1 57866 59710
AUO78279.1 MF547662_p61 guanylate kinase phrog_1815 guanylate kinase other -1 64760 65332
AUO78235.1 MF547662_p17 anti-repressor phrog_130 anti-repressor Ant transcription regulation 1 13848 14498
AUO78334.1 MF547662_p116 hypothetical protein phrog_20043 unknown function unknown function -1 98098 98442
AUO78247.1 MF547662_p29 hypothetical protein phrog_29638 unknown function unknown function 1 26638 26748
AUO78299.1 MF547662_p81 hypothetical protein phrog_9693 unknown function unknown function -1 82250 82807
AUO78314.1 MF547662_p96 hypothetical protein phrog_2316 unknown function unknown function -1 90001 90285
AUO78329.1 MF547662_p111 hypothetical protein phrog_2349 unknown function unknown function -1 96445 96891
AUO78367.1 MF547662_p149 hypothetical protein phrog_13170 unknown function unknown function -1 117317 117802
AUO78268.1 MF547662_p50 regulatory protein phrog_8 transcriptional regulator transcription regulation 1 54727 55080
AUO78342.1 MF547662_p124 hypothetical protein phrog_14252 unknown function unknown function -1 102022 102222
AUO78221.1 MF547662_p3 hypothetical protein phrog_2739 portal protein head and packaging 1 2589 4073
AUO78240.1 MF547662_p22 hypothetical protein phrog_28201 unknown function unknown function 1 18026 18313
AUO78316.1 MF547662_p98 replicase domain protein phrog_1828 unknown function unknown function -1 90850 91200
AUO78389.1 MF547662_p171 hypothetical protein phrog_21503 unknown function unknown function 1 132642 132830
AUO78335.1 MF547662_p117 hypothetical protein phrog_22775 unknown function unknown function -1 98543 98827
AUO78298.1 MF547662_p80 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 80674 82266
AUO78380.1 MF547662_p162 heat shock protein 70 phrog_691 partition protein DNA, RNA and nucleotide metabolism 1 125146 126090
AUO78341.1 MF547662_p123 hypothetical protein phrog_17222 unknown function unknown function -1 101438 102025
AUO78387.1 MF547662_p169 hypothetical protein phrog_30235 unknown function unknown function 1 130663 131217
AUO78255.1 MF547662_p37 hypothetical protein phrog_14191 unknown function unknown function 1 41230 41385
AUO78238.1 MF547662_p20 two-component response regulator phrog_8810 unknown function unknown function 1 16574 17278
AUO78282.1 MF547662_p64 hypothetical protein phrog_9051 unknown function unknown function -1 66748 67032
AUO78370.1 MF547662_p152 prophage antirepressor phrog_463 anti-repressor transcription regulation -1 119106 119864
AUO78289.1 MF547662_p71 hypothetical protein phrog_11035 unknown function unknown function -1 69712 69957
AUO78354.1 MF547662_p136 hypothetical protein phrog_10004 unknown function unknown function -1 107535 108428
AUO78364.1 MF547662_p146 hypothetical protein phrog_6809 unknown function unknown function -1 115469 115975
AUO78254.1 MF547662_p36 hypothetical protein phrog_11032 tail protein tail 1 39300 41228
AUO78256.1 MF547662_p38 tail fiber protein phrog_13479 tail fiber protein tail 1 41397 43472
AUO78250.1 MF547662_p32 hypothetical protein phrog_10871 tail length tape measure protein tail 1 29655 35723
AUO78271.1 MF547662_p53 hypothetical protein phrog_26516 unknown function unknown function 1 57223 57444
AUO78236.1 MF547662_p18 BRO family protein phrog_373 anti-repressor transcription regulation 1 14654 15439
AUO78258.1 MF547662_p40 hypothetical protein phrog_7546 unknown function unknown function 1 48386 48712
AUO78390.1 MF547662_p172 calcineurin-like phosphoesterase superfamily domain protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 132908 134101
AUO78233.1 MF547662_p15 hypothetical protein phrog_13029 unknown function unknown function 1 12558 13007
AUO78319.1 MF547662_p101 hypothetical protein phrog_32519 unknown function unknown function -1 91630 91806
AUO78222.1 MF547662_p4 hypothetical protein phrog_13023 unknown function unknown function 1 4027 4263
AUO78381.1 MF547662_p163 hypothetical protein phrog_30285 unknown function unknown function -1 126217 126843
AUO78261.1 MF547662_p43 hypothetical protein phrog_1626 rhodanese-related sulfurtransferase other 1 50866 51159
AUO78269.1 MF547662_p51 regulatory protein phrog_1077 transcriptional regulator transcription regulation 1 55218 55538
AUO78332.1 MF547662_p114 hypothetical protein phrog_9459 unknown function unknown function -1 97505 97972
AUO78315.1 MF547662_p97 hypothetical protein phrog_12588 unknown function unknown function -1 90385 90780
AUO78286.1 MF547662_p68 hypothetical protein phrog_17313 unknown function unknown function -1 68170 68322
AUO78343.1 MF547662_p125 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 102409 103692
AUO78244.1 MF547662_p26 prophage antirepressor phrog_130 anti-repressor Ant transcription regulation 1 23505 24548
AUO78326.1 MF547662_p108 hypothetical protein phrog_37110 unknown function unknown function -1 94863 95330
AUO78237.1 MF547662_p19 prophage antirepressor phrog_463 anti-repressor transcription regulation 1 15568 16281
AUO78338.1 MF547662_p120 hypothetical protein phrog_2574 unknown function unknown function -1 99807 100202
AUO78337.1 MF547662_p119 hypothetical protein phrog_21487 unknown function unknown function -1 99251 99787
AUO78291.1 MF547662_p73 hypothetical protein phrog_23747 unknown function unknown function -1 70114 70488
AUO78274.1 MF547662_p56 integrase phrog_1 integrase integration and excision -1 59755 60867
AUO78226.1 MF547662_p8 hypothetical protein phrog_5329 unknown function unknown function 1 7226 7819
AUO78231.1 MF547662_p13 hypothetical protein phrog_2729 virion structural protein head and packaging 1 10843 11661
AUO78363.1 MF547662_p145 hypothetical protein phrog_33254 unknown function unknown function -1 115148 115450
AUO78361.1 MF547662_p143 hypothetical protein phrog_4337 unknown function unknown function -1 114207 114740
AUO78243.1 MF547662_p25 regulatory protein phrog_8 transcriptional regulator transcription regulation -1 22795 23244
AUO78352.1 MF547662_p134 hypothetical protein phrog_10929 unknown function unknown function -1 106750 106890
AUO78372.1 MF547662_p154 hypothetical protein singleton unknown function unknown function -1 120159 120503
AUO78344.1 MF547662_p126 hypothetical protein phrog_9965 unknown function unknown function -1 103747 103932
AUO78267.1 MF547662_p49 XerC/XerD family integrase/recombinase phrog_1 integrase integration and excision 1 53521 54456
AUO78333.1 MF547662_p115 hypothetical protein phrog_19973 unknown function unknown function -1 98001 98111
AUO78251.1 MF547662_p33 hypothetical protein phrog_13860 unknown function unknown function 1 36911 37066
AUO78275.1 MF547662_p57 exodeoxyribonuclease X phrog_12402 unknown function unknown function 1 61318 62160
AUO78382.1 MF547662_p164 hypothetical protein phrog_22134 unknown function unknown function -1 126853 127092
AUO78385.1 MF547662_p167 DNA-binding protein phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 129151 129456
AUO78377.1 MF547662_p159 transcriptional regulator phrog_8 transcriptional regulator transcription regulation 1 122470 122787
AUO78296.1 MF547662_p78 single-stranded-DNA-specific exonuclease phrog_2484 RecJ-like ssDNA exonuclease DNA, RNA and nucleotide metabolism -1 77898 79598
AUO78297.1 MF547662_p79 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 79599 80450
AUO78351.1 MF547662_p133 hypothetical protein phrog_9264 unknown function unknown function -1 106506 106739
AUO78242.1 MF547662_p24 type II restriction enzyme, methylase subunit phrog_31645 unknown function unknown function 1 19472 22699
AUO78348.1 MF547662_p130 hypothetical protein phrog_19102 unknown function unknown function -1 105701 105817
AUO78285.1 MF547662_p67 hypothetical protein phrog_17129 unknown function unknown function -1 67974 68168
AUO78359.1 MF547662_p141 ATP-dependent helicase phrog_34950 helicase DNA, RNA and nucleotide metabolism -1 111123 113519
AUO78304.1 MF547662_p86 hypothetical protein phrog_9810 unknown function unknown function -1 85325 85885
AUO78376.1 MF547662_p158 hypothetical protein phrog_5553 unknown function unknown function -1 121400 121723
AUO78229.1 MF547662_p11 hypothetical protein phrog_11509 unknown function unknown function 1 9546 9995
AUO78265.1 MF547662_p47 membrane protein phrog_1129 holin lysis 1 52923 53174
AUO78232.1 MF547662_p14 hypothetical protein phrog_33 distal tail protein Dit tail 1 11759 12544
AUO78330.1 MF547662_p112 hypothetical protein phrog_9756 unknown function unknown function -1 96918 97073
AUO78287.1 MF547662_p69 hypothetical protein phrog_9215 unknown function unknown function -1 68319 69125
AUO78368.1 MF547662_p150 hypothetical protein phrog_11965 unknown function unknown function -1 118120 118704
AUO78252.1 MF547662_p34 hypothetical protein phrog_738 unknown function unknown function -1 37264 37380
AUO78245.1 MF547662_p27 hypothetical protein phrog_34504 unknown function unknown function 1 24649 25809
AUO78288.1 MF547662_p70 hypothetical protein phrog_18282 unknown function unknown function -1 69143 69676
AUO78227.1 MF547662_p9 hypothetical protein phrog_3853 unknown function unknown function 1 7866 8501
AUO78345.1 MF547662_p127 hypothetical protein phrog_1672 unknown function unknown function -1 104294 104683
AUO78353.1 MF547662_p135 hypothetical protein phrog_16601 unknown function unknown function -1 107036 107374
AUO78239.1 MF547662_p21 hypothetical protein phrog_16601 unknown function unknown function 1 17514 17873
AUO78323.1 MF547662_p105 hypothetical protein phrog_24958 unknown function unknown function -1 92632 92811
AUO78311.1 MF547662_p93 type I restriction-modification system methyltransferase subunit phrog_799 DNA methyltransferase other -1 88625 89227
AUO78260.1 MF547662_p42 glycine rich protein phrog_1589 unknown function unknown function 1 49137 50852
AUO78219.1 MF547662_p1 hypothetical protein phrog_3314 unknown function unknown function 1 1 861
AUO78263.1 MF547662_p45 endolysin phrog_435 endolysin lysis 1 51467 52282
AUO78248.1 MF547662_p30 hypothetical protein phrog_36346 unknown function unknown function 1 26809 27792
AUO78347.1 MF547662_p129 RNA 2'-phosphotransferase-like protein phrog_5470 RNA 2'-phosphotransferase DNA, RNA and nucleotide metabolism -1 105121 105720
AUO78253.1 MF547662_p35 hypothetical protein phrog_6211 minor tail protein tail 1 37583 39298
AUO78312.1 MF547662_p94 hypothetical protein phrog_17675 unknown function unknown function -1 89317 89643
AUO78225.1 MF547662_p7 hypothetical protein phrog_4088 unknown function unknown function 1 6228 7199
AUO78349.1 MF547662_p131 hypothetical protein phrog_18705 unknown function unknown function -1 105870 106064
AUO78259.1 MF547662_p41 tail fiber protein phrog_2137 tail fiber protein tail 1 48791 49120
AUO78357.1 MF547662_p139 hypothetical protein phrog_15170 unknown function unknown function -1 110114 110287
AUO78320.1 MF547662_p102 hypothetical protein phrog_10928 unknown function unknown function -1 91831 92061
AUO78310.1 MF547662_p92 hypothetical protein phrog_7644 unknown function unknown function -1 88401 88610
AUO78322.1 MF547662_p104 hypothetical protein phrog_31468 unknown function unknown function -1 92458 92610
AUO78317.1 MF547662_p99 hypothetical protein phrog_28235 unknown function unknown function -1 91226 91408
AUO78369.1 MF547662_p151 hypothetical protein phrog_16601 unknown function unknown function -1 118755 119093
AUO78257.1 MF547662_p39 RCC1 domain-containing protein phrog_7220 regulator of chromosome condensation DNA, RNA and nucleotide metabolism 1 43489 48372
AUO78249.1 MF547662_p31 ATPase phrog_13137 tail length tape measure protein tail 1 27854 29332
AUO78223.1 MF547662_p5 hypothetical protein phrog_3313 unknown function unknown function 1 4276 5658