Genomic map of Clostridioides phage LIBA2945 (MF547663)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF547663
Definition
Clostridioides phage LIBA2945, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
132508
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
172
%GC
26.27
Number of singletons
3
Number of paralogs
10

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AUO78518.1 MF547663_p128 RNA 2'-phosphotransferase-like protein phrog_5470 RNA 2'-phosphotransferase DNA, RNA and nucleotide metabolism -1 103661 104260
AUO78497.1 MF547663_p107 hypothetical protein phrog_37110 unknown function unknown function -1 93403 93870
AUO78482.1 MF547663_p92 hypothetical protein phrog_17675 unknown function unknown function -1 87857 88183
AUO78562.1 MF547663_p172 calcineurin-like phosphoesterase superfamily domain protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 131173 132366
AUO78528.1 MF547663_p138 transposase phrog_506 transposase integration and excision -1 109065 110228
AUO78516.1 MF547663_p126 hypothetical protein phrog_1672 unknown function unknown function -1 102834 103223
AUO78406.1 MF547663_p16 hypothetical protein phrog_11057 unknown function unknown function 1 13008 13445
AUO78459.1 MF547663_p69 hypothetical protein phrog_13836 unknown function unknown function -1 67007 67450
AUO78467.1 MF547663_p77 single-stranded-DNA-specific exonuclease phrog_2484 RecJ-like ssDNA exonuclease DNA, RNA and nucleotide metabolism -1 76621 78321
AUO78445.1 MF547663_p55 integrase phrog_1 integrase integration and excision -1 59605 60717
AUO78451.1 MF547663_p61 guanylate kinase phrog_1815 guanylate kinase other -1 63225 63806
AUO78443.1 MF547663_p53 hypothetical protein phrog_738 unknown function unknown function -1 57402 57533
AUO78503.1 MF547663_p113 hypothetical protein phrog_9459 unknown function unknown function -1 96045 96512
AUO78397.1 MF547663_p7 hypothetical protein phrog_4088 unknown function unknown function 1 6229 7200
AUO78553.1 MF547663_p163 hypothetical protein phrog_30285 unknown function unknown function -1 124481 125107
AUO78420.1 MF547663_p30 hypothetical protein phrog_36346 unknown function unknown function 1 26809 27792
AUO78433.1 MF547663_p43 hypothetical protein phrog_1243 unknown function unknown function 1 51009 51191
AUO78465.1 MF547663_p75 hypothetical protein phrog_22039 unknown function unknown function -1 72881 73183
AUO78458.1 MF547663_p68 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 66321 66986
AUO78470.1 MF547663_p80 hypothetical protein phrog_9693 unknown function unknown function -1 80973 81530
AUO78424.1 MF547663_p34 hypothetical protein phrog_6211 minor tail protein tail 1 37583 39298
AUO78442.1 MF547663_p52 hypothetical protein phrog_26516 unknown function unknown function 1 57073 57294
AUO78440.1 MF547663_p50 regulatory protein phrog_1077 transcriptional regulator transcription regulation 1 55068 55388
AUO78449.1 MF547663_p59 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 62213 62716
AUO78447.1 MF547663_p57 hypothetical protein phrog_18307 unknown function unknown function -1 61875 62048
AUO78452.1 MF547663_p62 hypothetical protein phrog_1233 unknown function unknown function -1 63799 64119
AUO78463.1 MF547663_p73 anaerobic ribonucleoside triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover -1 69206 71431
AUO78396.1 MF547663_p6 hypothetical protein phrog_4147 unknown function unknown function 1 5670 6158
AUO78400.1 MF547663_p10 hypothetical protein phrog_10703 unknown function unknown function 1 8440 9486
AUO78493.1 MF547663_p103 hypothetical protein phrog_31468 unknown function unknown function -1 90998 91150
AUO78436.1 MF547663_p46 membrane protein phrog_1129 holin lysis 1 52773 53024
AUO78524.1 MF547663_p134 hypothetical protein phrog_16601 unknown function unknown function -1 105576 105914
AUO78505.1 MF547663_p115 hypothetical protein phrog_20043 unknown function unknown function -1 96638 96982
AUO78417.1 MF547663_p27 hypothetical protein phrog_34504 unknown function unknown function 1 24649 25809
AUO78552.1 MF547663_p162 heat shock protein 70 phrog_691 partition protein DNA, RNA and nucleotide metabolism 1 123410 124354
AUO78511.1 MF547663_p121 hypothetical protein phrog_26717 unknown function unknown function -1 99768 99956
AUO78488.1 MF547663_p98 hypothetical protein phrog_28235 unknown function unknown function -1 89766 89948
AUO78462.1 MF547663_p72 anaerobic ribonucleoside-triphosphate reductase activating protein phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism -1 68713 69213
AUO78512.1 MF547663_p122 hypothetical protein phrog_17222 unknown function unknown function -1 99978 100565
AUO78468.1 MF547663_p78 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 78322 79173
AUO78441.1 MF547663_p51 cell surface protein phrog_8822 unknown function unknown function 1 55543 56805
AUO78412.1 MF547663_p22 hypothetical protein phrog_28201 unknown function unknown function 1 18026 18313
AUO78529.1 MF547663_p139 transposase phrog_2577 transposase integration and excision -1 110225 110626
AUO78527.1 MF547663_p137 hypothetical protein phrog_2727 unknown function unknown function -1 108206 108778
AUO78560.1 MF547663_p170 hypothetical protein phrog_1491 tail fiber protein tail 1 129921 130538
AUO78547.1 MF547663_p157 PemI phrog_2329 unknown function unknown function -1 119380 119568
AUO78484.1 MF547663_p94 hypothetical protein phrog_10192 unknown function unknown function -1 88362 88529
AUO78551.1 MF547663_p161 hypothetical protein phrog_35171 unknown function unknown function 1 123255 123392
AUO78509.1 MF547663_p119 hypothetical protein phrog_2574 unknown function unknown function -1 98347 98742
AUO78401.1 MF547663_p11 hypothetical protein phrog_11509 unknown function unknown function 1 9546 9995
AUO78414.1 MF547663_p24 type II restriction enzyme, methylase subunit phrog_31645 unknown function unknown function 1 19472 22699
AUO78538.1 MF547663_p148 hypothetical protein singleton unknown function unknown function -1 115495 115947
AUO78499.1 MF547663_p109 hypothetical protein phrog_9643 unknown function unknown function -1 94543 94824
AUO78480.1 MF547663_p90 hypothetical protein phrog_7644 unknown function unknown function -1 86941 87150
AUO78539.1 MF547663_p149 hypothetical protein phrog_12818 unknown function unknown function -1 115931 116089
AUO78393.1 MF547663_p3 hypothetical protein phrog_2739 portal protein head and packaging 1 2589 4073
AUO78399.1 MF547663_p9 hypothetical protein phrog_3853 unknown function unknown function 1 7866 8501
AUO78549.1 MF547663_p159 transcriptional regulator phrog_8 transcriptional regulator transcription regulation 1 120733 121050
AUO78475.1 MF547663_p85 hypothetical protein phrog_9810 unknown function unknown function -1 84048 84608
AUO78543.1 MF547663_p153 hypothetical protein singleton unknown function unknown function -1 117862 118473
AUO78515.1 MF547663_p125 hypothetical protein phrog_9965 unknown function unknown function -1 102287 102472
AUO78422.1 MF547663_p32 hypothetical protein phrog_10871 tail length tape measure protein tail 1 29655 35723
AUO78510.1 MF547663_p120 hypothetical protein phrog_2475 unknown function unknown function -1 98746 99756
AUO78496.1 MF547663_p106 hypothetical protein phrog_33773 unknown function unknown function -1 93024 93383
AUO78435.1 MF547663_p45 cell surface protein phrog_8124 endolysin lysis 1 52144 52761
AUO78540.1 MF547663_p150 hypothetical protein phrog_13170 unknown function unknown function -1 116086 116583
AUO78513.1 MF547663_p123 hypothetical protein phrog_14252 unknown function unknown function -1 100562 100762
AUO78508.1 MF547663_p118 hypothetical protein phrog_21487 unknown function unknown function -1 97791 98327
AUO78494.1 MF547663_p104 hypothetical protein phrog_24958 unknown function unknown function -1 91172 91351
AUO78428.1 MF547663_p38 RCC1 domain-containing protein phrog_7220 regulator of chromosome condensation DNA, RNA and nucleotide metabolism 1 43489 48372
AUO78479.1 MF547663_p89 hypothetical protein phrog_11322 unknown function unknown function -1 86567 86818
AUO78477.1 MF547663_p87 hypothetical protein phrog_9653 unknown function unknown function -1 85059 86180
AUO78432.1 MF547663_p42 hypothetical protein phrog_1626 rhodanese-related sulfurtransferase other 1 50716 51009
AUO78419.1 MF547663_p29 hypothetical protein phrog_29638 unknown function unknown function 1 26638 26748
AUO78490.1 MF547663_p100 hypothetical protein phrog_32519 unknown function unknown function -1 90170 90346
AUO78415.1 MF547663_p25 regulatory protein phrog_8 transcriptional regulator transcription regulation -1 22795 23244
AUO78429.1 MF547663_p39 hypothetical protein phrog_7546 unknown function unknown function 1 48386 48712
AUO78423.1 MF547663_p33 hypothetical protein phrog_13860 unknown function unknown function 1 36911 37066
AUO78471.1 MF547663_p81 ERF family protein phrog_2324 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 81597 82172
AUO78395.1 MF547663_p5 hypothetical protein phrog_3313 unknown function unknown function 1 4276 5658
AUO78550.1 MF547663_p160 hypothetical protein phrog_5553 unknown function unknown function -1 121317 121685
AUO78461.1 MF547663_p71 hypothetical protein phrog_13516 unknown function unknown function -1 68346 68618
AUO78557.1 MF547663_p167 DNA-binding protein phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 127412 127717
AUO78532.1 MF547663_p142 hypothetical protein phrog_10897 unknown function unknown function -1 112238 112570
AUO78409.1 MF547663_p19 prophage antirepressor phrog_463 anti-repressor transcription regulation 1 15568 16281
AUO78421.1 MF547663_p31 ATPase phrog_13137 tail length tape measure protein tail 1 27854 29332
AUO78544.1 MF547663_p154 hypothetical protein phrog_12348 unknown function unknown function -1 118535 118771
AUO78559.1 MF547663_p169 hypothetical protein phrog_30235 unknown function unknown function 1 128925 129479
AUO78472.1 MF547663_p82 hypothetical protein phrog_2367 unknown function unknown function -1 82213 83058
AUO78455.1 MF547663_p65 hypothetical protein phrog_9051 unknown function unknown function -1 65291 65548
AUO78534.1 MF547663_p144 transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 113010 113390
AUO78392.1 MF547663_p2 terminase-like family protein phrog_2 terminase large subunit head and packaging 1 845 2620
AUO78533.1 MF547663_p143 helix-turn-helix domain protein phrog_8 transcriptional regulator transcription regulation -1 112657 113004
AUO78407.1 MF547663_p17 anti-repressor phrog_130 anti-repressor Ant transcription regulation 1 13848 14498
AUO78403.1 MF547663_p13 hypothetical protein phrog_2729 virion structural protein head and packaging 1 10843 11661
AUO78411.1 MF547663_p21 hypothetical protein phrog_16601 unknown function unknown function 1 17514 17873
AUO78453.1 MF547663_p63 inactivated superfamily I helicase phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 64157 64996
AUO78489.1 MF547663_p99 hypothetical protein phrog_29310 unknown function unknown function -1 89941 90150
AUO78398.1 MF547663_p8 hypothetical protein phrog_5329 unknown function unknown function 1 7227 7820
AUO78450.1 MF547663_p60 RuvABC resolvasome endonuclease subunit phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 62740 63234
AUO78454.1 MF547663_p64 hypothetical protein phrog_9575 unknown function unknown function -1 65071 65280
AUO78437.1 MF547663_p47 hypothetical protein phrog_9316 holin lysis 1 53025 53336
AUO78498.1 MF547663_p108 hypothetical protein phrog_10778 unknown function unknown function -1 94062 94412
AUO78530.1 MF547663_p140 hypothetical protein phrog_4021 unknown function unknown function 1 111012 111311
AUO78416.1 MF547663_p26 prophage antirepressor phrog_130 anti-repressor Ant transcription regulation 1 23505 24548
AUO78391.1 MF547663_p1 hypothetical protein phrog_3314 unknown function unknown function 1 1 861
AUO78556.1 MF547663_p166 luxR family regulatory protein phrog_5767 sigma factor transcription regulation 1 126110 127300
AUO78486.1 MF547663_p96 hypothetical protein phrog_12588 unknown function unknown function -1 88925 89320
AUO78456.1 MF547663_p66 hypothetical protein phrog_9257 unknown function unknown function -1 65532 65786
AUO78426.1 MF547663_p36 hypothetical protein phrog_14191 unknown function unknown function 1 41230 41385
AUO78487.1 MF547663_p97 replicase domain protein phrog_1828 unknown function unknown function -1 89390 89740
AUO78439.1 MF547663_p49 regulatory protein phrog_8 transcriptional regulator transcription regulation 1 54577 54930
AUO78541.1 MF547663_p151 hypothetical protein phrog_11965 unknown function unknown function -1 116901 117485
AUO78464.1 MF547663_p74 DGQHR domain protein phrog_5732 unknown function unknown function -1 71571 72710
AUO78519.1 MF547663_p129 hypothetical protein phrog_19102 unknown function unknown function -1 104241 104357
AUO78394.1 MF547663_p4 hypothetical protein phrog_13023 unknown function unknown function 1 4027 4263
AUO78561.1 MF547663_p171 hypothetical protein phrog_21503 unknown function unknown function 1 130908 131096
AUO78520.1 MF547663_p130 hypothetical protein phrog_18705 unknown function unknown function -1 104410 104604
AUO78427.1 MF547663_p37 tail fiber protein phrog_13479 tail fiber protein tail 1 41397 43472
AUO78457.1 MF547663_p67 sporulation protein phrog_8268 spore protease other -1 65783 66310
AUO78536.1 MF547663_p146 hypothetical protein phrog_11092 unknown function unknown function -1 113789 115234
AUO78434.1 MF547663_p44 endolysin phrog_435 endolysin lysis 1 51317 52132
AUO78430.1 MF547663_p40 tail fiber protein phrog_2137 tail fiber protein tail 1 48791 49120
AUO78555.1 MF547663_p165 hypothetical protein phrog_28443 unknown function unknown function 1 125956 126150
AUO78431.1 MF547663_p41 glycine rich protein phrog_1589 unknown function unknown function 1 49137 50702
AUO78425.1 MF547663_p35 hypothetical protein phrog_11032 tail protein tail 1 39300 41228
AUO78418.1 MF547663_p28 hypothetical protein phrog_13544 unknown function unknown function 1 25869 26579
AUO78504.1 MF547663_p114 hypothetical protein phrog_19973 unknown function unknown function -1 96541 96651
AUO78438.1 MF547663_p48 XerC/XerD family integrase/recombinase phrog_1 integrase integration and excision 1 53371 54306
AUO78408.1 MF547663_p18 BRO family protein phrog_373 anti-repressor transcription regulation 1 14654 15439
AUO78446.1 MF547663_p56 NERD domain-containing protein phrog_21557 unknown function unknown function -1 61006 61755
AUO78500.1 MF547663_p110 hypothetical protein phrog_2349 unknown function unknown function -1 94985 95431
AUO78501.1 MF547663_p111 hypothetical protein phrog_9756 unknown function unknown function -1 95458 95613
AUO78558.1 MF547663_p168 hypothetical protein phrog_30164 unknown function unknown function 1 128161 128832
AUO78502.1 MF547663_p112 peptidyl-tRNA hydrolase phrog_1866 unknown function unknown function -1 95629 96009
AUO78474.1 MF547663_p84 hypothetical protein phrog_6721 unknown function unknown function -1 83371 84036
AUO78542.1 MF547663_p152 hypothetical protein phrog_13396 unknown function unknown function -1 117523 117786
AUO78448.1 MF547663_p58 hypothetical protein phrog_18268 unknown function unknown function -1 62072 62212
AUO78460.1 MF547663_p70 hypothetical protein phrog_9215 unknown function unknown function -1 67474 68325
AUO78531.1 MF547663_p141 hypothetical protein phrog_4337 unknown function unknown function -1 111617 112102
AUO78522.1 MF547663_p132 hypothetical protein phrog_9264 unknown function unknown function -1 105046 105279
AUO78495.1 MF547663_p105 release factor H-coupled RctB family protein phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism -1 91718 92971
AUO78526.1 MF547663_p136 site-specific tyrosine recombinase phrog_1 integrase integration and excision -1 107080 108039
AUO78473.1 MF547663_p83 hypothetical protein phrog_5479 unknown function unknown function -1 83178 83348
AUO78478.1 MF547663_p88 hypothetical protein phrog_9079 unknown function unknown function -1 86259 86567
AUO78546.1 MF547663_p156 hypothetical protein phrog_26646 unknown function unknown function -1 118993 119250
AUO78537.1 MF547663_p147 hypothetical protein singleton unknown function unknown function -1 115341 115505
AUO78483.1 MF547663_p93 hypothetical protein phrog_9445 unknown function unknown function -1 88210 88344
AUO78402.1 MF547663_p12 hypothetical protein phrog_9724 unknown function unknown function 1 9995 10798
AUO78535.1 MF547663_p145 transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 113410 113778
AUO78514.1 MF547663_p124 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 100949 102232
AUO78507.1 MF547663_p117 hypothetical protein phrog_24170 unknown function unknown function -1 97402 97770
AUO78404.1 MF547663_p14 hypothetical protein phrog_33 distal tail protein Dit tail 1 11759 12544
AUO78545.1 MF547663_p155 hypothetical protein phrog_14265 unknown function unknown function -1 118784 118921
AUO78444.1 MF547663_p54 hypothetical protein phrog_9827 unknown function unknown function -1 57716 59560
AUO78485.1 MF547663_p95 hypothetical protein phrog_2316 unknown function unknown function -1 88541 88825
AUO78466.1 MF547663_p76 DNA polymerase III phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 73296 76628
AUO78548.1 MF547663_p158 hypothetical protein phrog_5553 unknown function unknown function -1 119663 119986
AUO78492.1 MF547663_p102 hypothetical protein phrog_35003 unknown function unknown function -1 90619 90981
AUO78525.1 MF547663_p135 hypothetical protein phrog_10004 unknown function unknown function -1 106075 106968
AUO78413.1 MF547663_p23 hypothetical protein phrog_13585 unknown function unknown function 1 18681 18839
AUO78506.1 MF547663_p116 hypothetical protein phrog_22775 unknown function unknown function -1 97083 97367
AUO78523.1 MF547663_p133 hypothetical protein phrog_10929 unknown function unknown function -1 105290 105430
AUO78481.1 MF547663_p91 type I restriction-modification system methyltransferase subunit phrog_799 DNA methyltransferase other -1 87165 87767
AUO78521.1 MF547663_p131 YopX protein phrog_98 unknown function unknown function -1 104614 105027
AUO78517.1 MF547663_p127 hypothetical protein phrog_31316 unknown function unknown function -1 103300 103626
AUO78410.1 MF547663_p20 two-component response regulator phrog_8810 unknown function unknown function 1 16574 17278
AUO78554.1 MF547663_p164 hypothetical protein phrog_22134 unknown function unknown function -1 125117 125356
AUO78476.1 MF547663_p86 hypothetical protein phrog_9910 unknown function unknown function -1 84640 85065
AUO78405.1 MF547663_p15 hypothetical protein phrog_13029 unknown function unknown function 1 12558 13007
AUO78469.1 MF547663_p79 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 79397 80989
AUO78491.1 MF547663_p101 hypothetical protein phrog_10928 unknown function unknown function -1 90371 90601