| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF580769 |
Definition |
Streptococcus phage L5A1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus; unclassified Moineauvirus. |
DB of origin |
NUCCORE |
Length |
36884 |
Host Name |
Streptococcus thermophilus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
44 |
%GC |
38.85 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATI19872.1 | MF580769_p30 | hypothetical protein | phrog_3159 | unknown function | unknown function | 1 | 29142 | 29339 |
| ATI19849.1 | MF580769_p7 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5666 | 5980 |
| ATI19844.1 | MF580769_p2 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 559 | 2436 |
| ATI19876.1 | MF580769_p34 | hypothetical protein | phrog_24565 | unknown function | unknown function | 1 | 31758 | 32084 |
| ATI19870.1 | MF580769_p28 | replisome organizer | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 27439 | 28350 |
| ATI19868.1 | MF580769_p26 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 26123 | 26872 |
| ATI19874.1 | MF580769_p32 | Erf protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 29816 | 30466 |
| ATI19851.1 | MF580769_p9 | head-tail joining protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6337 | 6759 |
| ATI19855.1 | MF580769_p13 | tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 8414 | 13384 |
| ATI19858.1 | MF580769_p16 | accessory baseplate protein | phrog_202 | distal tail protein Dit | tail | 1 | 16695 | 18017 |
| ATI19871.1 | MF580769_p29 | helicase | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 28363 | 29145 |
| ATI19863.1 | MF580769_p21 | hypothetical protein | phrog_1296 | holin | lysis | 1 | 23950 | 24273 |
| ATI19859.1 | MF580769_p17 | hypothetical protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 18017 | 21286 |
| ATI19884.1 | MF580769_p42 | hypothetical protein | phrog_1814 | unknown function | unknown function | 1 | 34503 | 35303 |
| ATI19886.1 | MF580769_p44 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 36272 | 36790 |
| ATI19843.1 | MF580769_p1 | terminase | phrog_83 | terminase small subunit | head and packaging | 1 | 88 | 546 |
| ATI19875.1 | MF580769_p33 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 30469 | 31431 |
| ATI19848.1 | MF580769_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4458 | 5651 |
| ATI19880.1 | MF580769_p38 | hypothetical protein | phrog_1489 | unknown function | unknown function | 1 | 33294 | 33449 |
| ATI19860.1 | MF580769_p18 | minor structural protein | phrog_372 | tail protein | tail | 1 | 21286 | 23334 |
| ATI19877.1 | MF580769_p35 | ssDNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 32103 | 32549 |
| ATI19846.1 | MF580769_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2637 | 3788 |
| ATI19853.1 | MF580769_p11 | major tail protein | phrog_88 | major tail protein | tail | 1 | 7156 | 7767 |
| ATI19854.1 | MF580769_p12 | tail protein | phrog_1346 | tail protein | tail | 1 | 7842 | 8195 |
| ATI19857.1 | MF580769_p15 | host specificity protein | phrog_6253 | minor tail protein | tail | 1 | 14937 | 16643 |
| ATI19864.1 | MF580769_p22 | holin | phrog_297 | holin | lysis | 1 | 24270 | 24512 |
| ATI19879.1 | MF580769_p37 | hypothetical protein | phrog_1982 | unknown function | unknown function | 1 | 33016 | 33252 |
| ATI19885.1 | MF580769_p43 | Apaf-1 related killer DARK | phrog_36 | transcriptional regulator | transcription regulation | 1 | 35763 | 36161 |
| ATI19865.1 | MF580769_p23 | lysin | phrog_998 | endolysin | lysis | 1 | 24514 | 25359 |
| ATI19883.1 | MF580769_p41 | hypothetical protein | phrog_32319 | unknown function | unknown function | 1 | 34432 | 34560 |
| ATI19878.1 | MF580769_p36 | endodeoxyribonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 32558 | 33019 |
| ATI19861.1 | MF580769_p19 | hypothetical protein | phrog_1060 | unknown function | unknown function | 1 | 23356 | 23766 |
| ATI19845.1 | MF580769_p3 | head-tail joining protein | phrog_1142 | unknown function | unknown function | 1 | 2440 | 2619 |
| ATI19852.1 | MF580769_p10 | tail protein | phrog_1217 | tail protein | tail | 1 | 6764 | 7135 |
| ATI19866.1 | MF580769_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25553 | 25723 |
| ATI19847.1 | MF580769_p5 | scaffolding protein | phrog_94 | head maturation protease | head and packaging | 1 | 3775 | 4443 |
| ATI19850.1 | MF580769_p8 | capsid-tail joining protein | phrog_25 | head closure Hc1 | connector | 1 | 5980 | 6330 |
| ATI19873.1 | MF580769_p31 | hypothetical protein | phrog_3159 | unknown function | unknown function | 1 | 29524 | 29706 |
| ATI19867.1 | MF580769_p25 | cro repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 25877 | 26104 |
| ATI19856.1 | MF580769_p14 | distal tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 13381 | 14937 |
| ATI19862.1 | MF580769_p20 | hypothetical protein | phrog_1567 | unknown function | unknown function | 1 | 23786 | 23932 |
| ATI19882.1 | MF580769_p40 | DNA binding protein | phrog_1994 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33951 | 34463 |
| ATI19881.1 | MF580769_p39 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 33450 | 33950 |
| ATI19869.1 | MF580769_p27 | hypothetical protein | phrog_1022 | unknown function | unknown function | 1 | 27065 | 27211 |