Genomic map of Streptococcus phage R1 (MF580772)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF580772
Definition
Streptococcus phage R1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus; unclassified Moineauvirus.
DB of origin
NUCCORE
Length
34652
Host Name
Streptococcus thermophilus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
39
%GC
38.73
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATI20000.1 MF580772_p29 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 26574 27905
ATI19994.1 MF580772_p23 cro-like protein phrog_3 transcriptional repressor transcription regulation 1 23210 23413
ATI19995.1 MF580772_p24 hypothetical protein phrog_1733 unknown function unknown function 1 23454 24353
ATI20004.1 MF580772_p33 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 30919 31242
ATI19985.1 MF580772_p14 distal tail protein phrog_202 distal tail protein Dit tail 1 13600 15156
ATI19984.1 MF580772_p13 tape measure protein phrog_167 tail length tape measure protein tail 1 8633 13603
ATI19982.1 MF580772_p11 major tail protein phrog_88 major tail protein tail 1 7375 7986
ATI19991.1 MF580772_p20 holin phrog_297 holin lysis 1 21420 21662
ATI19981.1 MF580772_p10 tail protein phrog_1217 tail protein tail 1 6985 7356
ATI20005.1 MF580772_p34 hypothetical protein phrog_1982 unknown function unknown function 1 31223 31471
ATI19990.1 MF580772_p19 hypothetical protein phrog_1296 holin lysis 1 21089 21412
ATI19993.1 MF580772_p22 lysin phrog_998 endolysin lysis 1 21952 22797
ATI19989.1 MF580772_p18 hypothetical protein phrog_1567 unknown function unknown function 1 20925 21071
ATI19978.1 MF580772_p7 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 5887 6201
ATI19992.1 MF580772_p21 lysin singleton unknown function unknown function 1 21664 21912
ATI19997.1 MF580772_p26 cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 25007 25216
ATI19980.1 MF580772_p9 head-tail joining protein phrog_5 tail completion or Neck1 protein connector 1 6558 6980
ATI19998.1 MF580772_p27 hypothetical protein phrog_4084 unknown function unknown function 1 25532 25894
ATI20002.1 MF580772_p31 hypothetical protein phrog_695 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 28370 29176
ATI19999.1 MF580772_p28 DNA binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 26069 26599
ATI19986.1 MF580772_p15 receptor binding protein phrog_588 tail fiber protein and host specificity tail 1 15156 18425
ATI19974.1 MF580772_p3 head-tail joining protein phrog_1142 unknown function unknown function 1 2661 2840
ATI20010.1 MF580772_p39 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 34050 34559
ATI19983.1 MF580772_p12 tail protein phrog_1346 tail protein tail 1 8019 8414
ATI19988.1 MF580772_p17 hypothetical protein phrog_1060 unknown function unknown function 1 20495 20905
ATI19973.1 MF580772_p2 terminase phrog_9 terminase large subunit head and packaging 1 1023 2657
ATI20006.1 MF580772_p35 hypothetical protein phrog_14905 unknown function unknown function 1 31456 31734
ATI20001.1 MF580772_p30 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 27912 28367
ATI20009.1 MF580772_p38 Apaf-1 related killer DARK phrog_36 transcriptional regulator transcription regulation 1 33541 33939
ATI19987.1 MF580772_p16 accessory baseplate protein phrog_372 tail protein tail 1 18425 20473
ATI20007.1 MF580772_p36 hypothetical protein phrog_4400 unknown function unknown function 1 31743 32387
ATI19976.1 MF580772_p5 scaffolding protein phrog_94 head maturation protease head and packaging 1 3996 4664
ATI19979.1 MF580772_p8 capsid-tail joining protein phrog_25 head closure Hc1 connector 1 6201 6551
ATI19996.1 MF580772_p25 hypothetical protein phrog_2902 anti-repressor transcription regulation 1 24346 24885
ATI20008.1 MF580772_p37 hypothetical protein phrog_1814 unknown function unknown function 1 32391 33098
ATI19972.1 MF580772_p1 terminase phrog_83 terminase small subunit head and packaging 1 304 762
ATI20003.1 MF580772_p32 primase phrog_864 DNA primase DNA, RNA and nucleotide metabolism 1 29163 30665
ATI19975.1 MF580772_p4 portal protein phrog_12 portal protein head and packaging 1 2858 4009
ATI19977.1 MF580772_p6 major head protein phrog_10 major head protein head and packaging 1 4679 5872