| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF580772 |
Definition |
Streptococcus phage R1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus; unclassified Moineauvirus. |
DB of origin |
NUCCORE |
Length |
34652 |
Host Name |
Streptococcus thermophilus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
39 |
%GC |
38.73 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATI20000.1 | MF580772_p29 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 26574 | 27905 |
| ATI19994.1 | MF580772_p23 | cro-like protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 23210 | 23413 |
| ATI19995.1 | MF580772_p24 | hypothetical protein | phrog_1733 | unknown function | unknown function | 1 | 23454 | 24353 |
| ATI20004.1 | MF580772_p33 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 30919 | 31242 |
| ATI19985.1 | MF580772_p14 | distal tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 13600 | 15156 |
| ATI19984.1 | MF580772_p13 | tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 8633 | 13603 |
| ATI19982.1 | MF580772_p11 | major tail protein | phrog_88 | major tail protein | tail | 1 | 7375 | 7986 |
| ATI19991.1 | MF580772_p20 | holin | phrog_297 | holin | lysis | 1 | 21420 | 21662 |
| ATI19981.1 | MF580772_p10 | tail protein | phrog_1217 | tail protein | tail | 1 | 6985 | 7356 |
| ATI20005.1 | MF580772_p34 | hypothetical protein | phrog_1982 | unknown function | unknown function | 1 | 31223 | 31471 |
| ATI19990.1 | MF580772_p19 | hypothetical protein | phrog_1296 | holin | lysis | 1 | 21089 | 21412 |
| ATI19993.1 | MF580772_p22 | lysin | phrog_998 | endolysin | lysis | 1 | 21952 | 22797 |
| ATI19989.1 | MF580772_p18 | hypothetical protein | phrog_1567 | unknown function | unknown function | 1 | 20925 | 21071 |
| ATI19978.1 | MF580772_p7 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5887 | 6201 |
| ATI19992.1 | MF580772_p21 | lysin | singleton | unknown function | unknown function | 1 | 21664 | 21912 |
| ATI19997.1 | MF580772_p26 | cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 25007 | 25216 |
| ATI19980.1 | MF580772_p9 | head-tail joining protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6558 | 6980 |
| ATI19998.1 | MF580772_p27 | hypothetical protein | phrog_4084 | unknown function | unknown function | 1 | 25532 | 25894 |
| ATI20002.1 | MF580772_p31 | hypothetical protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 28370 | 29176 |
| ATI19999.1 | MF580772_p28 | DNA binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 26069 | 26599 |
| ATI19986.1 | MF580772_p15 | receptor binding protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 15156 | 18425 |
| ATI19974.1 | MF580772_p3 | head-tail joining protein | phrog_1142 | unknown function | unknown function | 1 | 2661 | 2840 |
| ATI20010.1 | MF580772_p39 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34050 | 34559 |
| ATI19983.1 | MF580772_p12 | tail protein | phrog_1346 | tail protein | tail | 1 | 8019 | 8414 |
| ATI19988.1 | MF580772_p17 | hypothetical protein | phrog_1060 | unknown function | unknown function | 1 | 20495 | 20905 |
| ATI19973.1 | MF580772_p2 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 1023 | 2657 |
| ATI20006.1 | MF580772_p35 | hypothetical protein | phrog_14905 | unknown function | unknown function | 1 | 31456 | 31734 |
| ATI20001.1 | MF580772_p30 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 27912 | 28367 |
| ATI20009.1 | MF580772_p38 | Apaf-1 related killer DARK | phrog_36 | transcriptional regulator | transcription regulation | 1 | 33541 | 33939 |
| ATI19987.1 | MF580772_p16 | accessory baseplate protein | phrog_372 | tail protein | tail | 1 | 18425 | 20473 |
| ATI20007.1 | MF580772_p36 | hypothetical protein | phrog_4400 | unknown function | unknown function | 1 | 31743 | 32387 |
| ATI19976.1 | MF580772_p5 | scaffolding protein | phrog_94 | head maturation protease | head and packaging | 1 | 3996 | 4664 |
| ATI19979.1 | MF580772_p8 | capsid-tail joining protein | phrog_25 | head closure Hc1 | connector | 1 | 6201 | 6551 |
| ATI19996.1 | MF580772_p25 | hypothetical protein | phrog_2902 | anti-repressor | transcription regulation | 1 | 24346 | 24885 |
| ATI20008.1 | MF580772_p37 | hypothetical protein | phrog_1814 | unknown function | unknown function | 1 | 32391 | 33098 |
| ATI19972.1 | MF580772_p1 | terminase | phrog_83 | terminase small subunit | head and packaging | 1 | 304 | 762 |
| ATI20003.1 | MF580772_p32 | primase | phrog_864 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 29163 | 30665 |
| ATI19975.1 | MF580772_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2858 | 4009 |
| ATI19977.1 | MF580772_p6 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 4679 | 5872 |