| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF595878 |
Definition |
Caldibacillus phage CBP1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
37316 |
Host Name |
Caldibacillus debilis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
66 |
%GC |
41.86 |
Number of singletons |
25 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATB52698.1 | MF595878_p11 | roantirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 3169 | 3951 |
| ATB52751.1 | MF595878_p64 | nucleotidyltransferase | singleton | unknown function | unknown function | -1 | 35167 | 35481 |
| ATB52710.1 | MF595878_p23 | single-strand binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 9239 | 9673 |
| ATB52695.1 | MF595878_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2280 | 2411 |
| ATB52728.1 | MF595878_p41 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 18736 | 19497 |
| ATB52750.1 | MF595878_p63 | nucleotidyltransferase | phrog_1268 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 34272 | 35180 |
| ATB52700.1 | MF595878_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4101 | 4265 |
| ATB52727.1 | MF595878_p40 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 17580 | 18755 |
| ATB52688.1 | MF595878_p1 | helix turn helix domain protein | phrog_4691 | excisionase | integration and excision | 1 | 1 | 249 |
| ATB52714.1 | MF595878_p27 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11069 | 11392 |
| ATB52696.1 | MF595878_p9 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2371 | 2751 |
| ATB52740.1 | MF595878_p53 | TMP repeat containing protein | singleton | unknown function | unknown function | 1 | 25523 | 26119 |
| ATB52693.1 | MF595878_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1245 | 1418 |
| ATB52744.1 | MF595878_p57 | hypothetical protein | phrog_2429 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 31353 | 31571 |
| ATB52733.1 | MF595878_p46 | tail-component | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21619 | 21969 |
| ATB52706.1 | MF595878_p19 | hypothetical protein | phrog_1227 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 6971 | 7792 |
| ATB52742.1 | MF595878_p55 | hypothetical protein | phrog_12586 | unknown function | unknown function | 1 | 30710 | 30886 |
| ATB52735.1 | MF595878_p48 | major tail protein | phrog_88 | major tail protein | tail | 1 | 22277 | 22849 |
| ATB52725.1 | MF595878_p38 | hypothetical protein | phrog_1066 | unknown function | unknown function | 1 | 15531 | 15890 |
| ATB52753.1 | MF595878_p66 | site-specific recombinase | phrog_95 | integrase | integration and excision | 1 | 35787 | 37316 |
| ATB52737.1 | MF595878_p50 | hypothetical protein | phrog_3033 | unknown function | unknown function | 1 | 23291 | 23413 |
| ATB52705.1 | MF595878_p18 | hypothetical protein | phrog_3657 | unknown function | unknown function | 1 | 6100 | 7032 |
| ATB52689.1 | MF595878_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 333 | 596 |
| ATB52691.1 | MF595878_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 873 | 992 |
| ATB52752.1 | MF595878_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35467 | 35664 |
| ATB52707.1 | MF595878_p20 | hypothetical protein | phrog_3674 | unknown function | unknown function | 1 | 7785 | 7949 |
| ATB52721.1 | MF595878_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14416 | 14742 |
| ATB52739.1 | MF595878_p52 | TMP repeat containing protein | singleton | unknown function | unknown function | 1 | 24837 | 25403 |
| ATB52745.1 | MF595878_p58 | holin | phrog_1299 | holin | lysis | 1 | 31613 | 31855 |
| ATB52690.1 | MF595878_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 653 | 871 |
| ATB52699.1 | MF595878_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3952 | 4080 |
| ATB52729.1 | MF595878_p42 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 19490 | 20722 |
| ATB52711.1 | MF595878_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9699 | 9878 |
| ATB52719.1 | MF595878_p32 | hypothetical protein | phrog_1058 | unknown function | unknown function | 1 | 12703 | 13182 |
| ATB52741.1 | MF595878_p54 | minor structural protein | phrog_33 | distal tail protein Dit | tail | 1 | 26116 | 26925 |
| ATB52692.1 | MF595878_p5 | transcriptional regulator | singleton | unknown function | unknown function | 1 | 1041 | 1280 |
| ATB52749.1 | MF595878_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33488 | 34078 |
| ATB52703.1 | MF595878_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5173 | 5487 |
| ATB52702.1 | MF595878_p15 | hypothetical protein | phrog_6048 | unknown function | unknown function | 1 | 4901 | 5176 |
| ATB52748.1 | MF595878_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33316 | 33471 |
| ATB52726.1 | MF595878_p39 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 15883 | 17565 |
| ATB52732.1 | MF595878_p45 | hypothetical protein | phrog_1951 | head-tail adaptor | connector | 1 | 21324 | 21626 |
| ATB52723.1 | MF595878_p36 | hypothetical protein | phrog_16443 | unknown function | unknown function | 1 | 14810 | 15073 |
| ATB52738.1 | MF595878_p51 | hypothetical protein | phrog_5755 | tail length tape measure protein | tail | 1 | 23427 | 24722 |
| ATB52709.1 | MF595878_p22 | hypothetical protein | phrog_9455 | unknown function | unknown function | 1 | 8975 | 9166 |
| ATB52730.1 | MF595878_p43 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 20728 | 21021 |
| ATB52708.1 | MF595878_p21 | replication protein O | phrog_16826 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 7956 | 8960 |
| ATB52712.1 | MF595878_p25 | dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 9856 | 10461 |
| ATB52722.1 | MF595878_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14745 | 14861 |
| ATB52715.1 | MF595878_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11365 | 11655 |
| ATB52734.1 | MF595878_p47 | aminopeptidase | phrog_78 | tail terminator | connector | 1 | 21959 | 22276 |
| ATB52697.1 | MF595878_p10 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 2945 | 3169 |
| ATB52724.1 | MF595878_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15106 | 15249 |
| ATB52747.1 | MF595878_p60 | PIN domain protein | singleton | unknown function | unknown function | -1 | 32600 | 33319 |
| ATB52716.1 | MF595878_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12058 | 12213 |
| ATB52720.1 | MF595878_p33 | hypothetical protein | phrog_7339 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 13385 | 14428 |
| ATB52704.1 | MF595878_p17 | hypothetical protein | phrog_17207 | unknown function | unknown function | 1 | 5788 | 6009 |
| ATB52694.1 | MF595878_p7 | hypothetical protein | phrog_3727 | unknown function | unknown function | -1 | 1501 | 2130 |
| ATB52731.1 | MF595878_p44 | DNA packaging protein | phrog_5223 | neck protein | connector | 1 | 21023 | 21337 |
| ATB52713.1 | MF595878_p26 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10470 | 11069 |
| ATB52718.1 | MF595878_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12425 | 12703 |
| ATB52743.1 | MF595878_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30946 | 31302 |
| ATB52746.1 | MF595878_p59 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 31939 | 32565 |
| ATB52736.1 | MF595878_p49 | hypothetical protein | phrog_709 | unknown function | unknown function | 1 | 22869 | 23210 |
| ATB52717.1 | MF595878_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12261 | 12425 |
| ATB52701.1 | MF595878_p14 | hypothetical protein | phrog_1124 | transcriptional regulator | transcription regulation | 1 | 4376 | 4900 |