| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF614627 |
Definition |
Sinorhizobium phage phi2LM21, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
46600 |
Host Name |
Sinorhizobium sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
60.64 |
Number of singletons |
15 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE84661.1 | MF614627_p44 | tail tape measure protein | phrog_10574 | tail length tape measure protein | tail | 1 | 25645 | 27534 |
| ATE84659.1 | MF614627_p42 | hypothetical protein | phrog_13724 | unknown function | unknown function | 1 | 24989 | 25390 |
| ATE84655.1 | MF614627_p38 | hypothetical protein | phrog_12140 | head closure Hc1 | connector | 1 | 23439 | 23765 |
| ATE84665.1 | MF614627_p48 | tail fiber protein J | phrog_5616 | tail fiber protein | tail | 1 | 29191 | 31821 |
| ATE84682.1 | MF614627_p65 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 41756 | 42688 |
| ATE84623.1 | MF614627_p6 | hypothetical protein | phrog_2730 | unknown function | unknown function | -1 | 2752 | 2961 |
| ATE84675.1 | MF614627_p58 | SOS response-associated peptidase | phrog_1599 | unknown function | unknown function | -1 | 39134 | 39799 |
| ATE84652.1 | MF614627_p35 | head decoration protein | phrog_49 | head decoration | head and packaging | 1 | 21520 | 21876 |
| ATE84669.1 | MF614627_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34742 | 35347 |
| ATE84676.1 | MF614627_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39808 | 40065 |
| ATE84662.1 | MF614627_p45 | hypothetical protein | phrog_1302 | distal tail protein | tail | 1 | 27534 | 28184 |
| ATE84624.1 | MF614627_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2958 | 3068 |
| ATE84656.1 | MF614627_p39 | hypothetical protein | phrog_14028 | unknown function | unknown function | 1 | 23767 | 24063 |
| ATE84686.1 | MF614627_p69 | hypothetical protein | phrog_2315 | unknown function | unknown function | 1 | 46128 | 46466 |
| ATE84633.1 | MF614627_p16 | repressor protein CI | phrog_4 | transcriptional repressor | transcription regulation | -1 | 6033 | 6830 |
| ATE84674.1 | MF614627_p57 | ATP-dependent DNA ligase | singleton | unknown function | unknown function | 1 | 37747 | 39126 |
| ATE84658.1 | MF614627_p41 | major tail protein | phrog_1407 | major tail protein | tail | 1 | 24568 | 24978 |
| ATE84670.1 | MF614627_p53 | hypothetical protein | phrog_17682 | unknown function | unknown function | -1 | 35563 | 35889 |
| ATE84618.1 | MF614627_p1 | tyrosine integrase | phrog_1 | integrase | integration and excision | -1 | 123 | 1205 |
| ATE84622.1 | MF614627_p5 | hypothetical protein | phrog_464 | unknown function | unknown function | -1 | 2363 | 2755 |
| ATE84645.1 | MF614627_p28 | hypothetical protein | phrog_1924 | minor tail protein | tail | 1 | 14476 | 15222 |
| ATE84684.1 | MF614627_p67 | hypothetical protein | phrog_5023 | unknown function | unknown function | -1 | 43795 | 44979 |
| ATE84625.1 | MF614627_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3068 | 3583 |
| ATE84681.1 | MF614627_p64 | hypothetical protein | phrog_37486 | unknown function | unknown function | -1 | 41382 | 41645 |
| ATE84671.1 | MF614627_p54 | chitinase | phrog_181 | endolysin | lysis | 1 | 35991 | 36908 |
| ATE84632.1 | MF614627_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5853 | 6032 |
| ATE84678.1 | MF614627_p61 | hypothetical protein | phrog_29777 | unknown function | unknown function | -1 | 40573 | 40749 |
| ATE84644.1 | MF614627_p27 | transcription antitermination protein | phrog_6386 | transcription antiterminator | transcription regulation | 1 | 13607 | 14239 |
| ATE84668.1 | MF614627_p51 | tail fiber protein | phrog_6162 | tail fiber protein | tail | 1 | 33649 | 34737 |
| ATE84621.1 | MF614627_p4 | hypothetical protein | phrog_10379 | unknown function | unknown function | -1 | 1839 | 2366 |
| ATE84641.1 | MF614627_p24 | hypothetical protein | phrog_27894 | unknown function | unknown function | 1 | 12009 | 12248 |
| ATE84639.1 | MF614627_p22 | hypothetical protein | phrog_16358 | unknown function | unknown function | 1 | 9834 | 10148 |
| ATE84626.1 | MF614627_p9 | 5'-deoxynucleotidase | phrog_318 | deoxyribonucleoside 5' monophosphate phosphatase | other | -1 | 3576 | 4184 |
| ATE84648.1 | MF614627_p31 | head-to-tail joining protein | phrog_75 | head-tail adaptor Ad1 | connector | 1 | 18077 | 18313 |
| ATE84679.1 | MF614627_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40746 | 41018 |
| ATE84664.1 | MF614627_p47 | hypothetical protein | phrog_2134 | unknown function | unknown function | 1 | 28778 | 29182 |
| ATE84631.1 | MF614627_p14 | hypothetical protein | phrog_22869 | unknown function | unknown function | -1 | 5449 | 5664 |
| ATE84647.1 | MF614627_p30 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 16026 | 18068 |
| ATE84634.1 | MF614627_p17 | Cro-like protein | phrog_35 | transcriptional repressor | transcription regulation | 1 | 6926 | 7162 |
| ATE84635.1 | MF614627_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7162 | 7299 |
| ATE84680.1 | MF614627_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41015 | 41245 |
| ATE84672.1 | MF614627_p55 | hypothetical protein | phrog_23603 | unknown function | unknown function | 1 | 36911 | 37129 |
| ATE84643.1 | MF614627_p26 | helix-turn-helix domain-containing protein | phrog_270 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 12355 | 13620 |
| ATE84677.1 | MF614627_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40132 | 40545 |
| ATE84646.1 | MF614627_p29 | hypothetical protein | phrog_57 | terminase small subunit | head and packaging | 1 | 15367 | 16029 |
| ATE84650.1 | MF614627_p33 | head maturation protease C | phrog_53 | head maturation protease | head and packaging | 1 | 20028 | 20936 |
| ATE84657.1 | MF614627_p40 | hypothetical protein | phrog_4204 | tail terminator | connector | 1 | 24065 | 24529 |
| ATE84629.1 | MF614627_p12 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4870 | 5196 |
| ATE84660.1 | MF614627_p43 | tail assembly chaperone | singleton | unknown function | unknown function | 1 | 25387 | 25638 |
| ATE84663.1 | MF614627_p46 | hypothetical protein | phrog_11779 | unknown function | unknown function | 1 | 28181 | 28774 |
| ATE84683.1 | MF614627_p66 | adenine specific DNA methyltransferase | phrog_56 | DNA methyltransferase | other | 1 | 42883 | 43719 |
| ATE84627.1 | MF614627_p10 | hypothetical protein | phrog_33097 | unknown function | unknown function | -1 | 4177 | 4347 |
| ATE84654.1 | MF614627_p37 | hypothetical protein | phrog_13113 | unknown function | unknown function | 1 | 23014 | 23439 |
| ATE84673.1 | MF614627_p56 | holin | phrog_126 | holin/anti-holin | lysis | 1 | 37273 | 37602 |
| ATE84637.1 | MF614627_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7889 | 8041 |
| ATE84666.1 | MF614627_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31838 | 32059 |
| ATE84642.1 | MF614627_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12245 | 12358 |
| ATE84620.1 | MF614627_p3 | HNH endonuclease | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 1465 | 1842 |
| ATE84685.1 | MF614627_p68 | nucleoid-associated protein | phrog_3767 | nucleoid associated protein | DNA, RNA and nucleotide metabolism | -1 | 44972 | 45973 |
| ATE84651.1 | MF614627_p34 | hypothetical protein | phrog_6382 | unknown function | unknown function | 1 | 20961 | 21515 |
| ATE84628.1 | MF614627_p11 | hypothetical protein | phrog_6628 | unknown function | unknown function | -1 | 4340 | 4873 |
| ATE84653.1 | MF614627_p36 | major capsid protein E | phrog_29 | major head protein | head and packaging | 1 | 21905 | 22933 |
| ATE84619.1 | MF614627_p2 | transcriptional regulator | phrog_25900 | transcriptional regulator | transcription regulation | -1 | 1205 | 1465 |
| ATE84667.1 | MF614627_p50 | hypothetical protein | phrog_21060 | unknown function | unknown function | 1 | 32073 | 33635 |
| ATE84649.1 | MF614627_p32 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 18310 | 20031 |
| ATE84630.1 | MF614627_p13 | hypothetical protein | phrog_22894 | unknown function | unknown function | -1 | 5196 | 5369 |
| ATE84636.1 | MF614627_p19 | hypothetical protein | phrog_101 | CII-like transcriptional activator | transcription regulation | 1 | 7401 | 7889 |
| ATE84638.1 | MF614627_p21 | CcrM-like DNA methyltransferase | phrog_799 | DNA methyltransferase | other | 1 | 8038 | 9837 |
| ATE84640.1 | MF614627_p23 | C-5 cytosine-specific DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 10168 | 12012 |