| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF614628 |
Definition |
Sinorhizobium phage phi3LM21, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
41448 |
Host Name |
Sinorhizobium sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
61.23 |
Number of singletons |
21 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE84709.1 | MF614628_p23 | DNA polymerase A domain-containing protein | phrog_21667 | unknown function | unknown function | 1 | 11384 | 12058 |
| ATE84722.1 | MF614628_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23686 | 24168 |
| ATE84741.1 | MF614628_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37860 | 38159 |
| ATE84740.1 | MF614628_p54 | hypothetical protein | phrog_5211 | unknown function | unknown function | 1 | 37508 | 37843 |
| ATE84711.1 | MF614628_p25 | hypothetical protein | phrog_757 | DNA methyltransferase | other | 1 | 12345 | 12992 |
| ATE84707.1 | MF614628_p21 | CcrM-like DNA methyltransferase | phrog_799 | DNA methyltransferase | other | 1 | 9490 | 10848 |
| ATE84730.1 | MF614628_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28395 | 28574 |
| ATE84690.1 | MF614628_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2051 | 2227 |
| ATE84701.1 | MF614628_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6963 | 7196 |
| ATE84696.1 | MF614628_p10 | HTH-domain containing protein | singleton | unknown function | unknown function | -1 | 4674 | 5012 |
| ATE84721.1 | MF614628_p35 | major capsid protein | phrog_371 | major head protein | head and packaging | 1 | 22682 | 23614 |
| ATE84706.1 | MF614628_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9260 | 9490 |
| ATE84716.1 | MF614628_p30 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 16702 | 18822 |
| ATE84702.1 | MF614628_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7189 | 7491 |
| ATE84714.1 | MF614628_p28 | hypothetical protein | phrog_1924 | minor tail protein | tail | 1 | 15112 | 15888 |
| ATE84742.1 | MF614628_p56 | hypothetical protein | phrog_12188 | unknown function | unknown function | 1 | 38275 | 38568 |
| ATE84717.1 | MF614628_p31 | hypothetical protein | phrog_118 | head-tail adaptor | connector | 1 | 18822 | 19046 |
| ATE84738.1 | MF614628_p52 | ammonia monooxygenase | phrog_3362 | unknown function | unknown function | 1 | 36780 | 37148 |
| ATE84700.1 | MF614628_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6590 | 6874 |
| ATE84744.1 | MF614628_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39598 | 40287 |
| ATE84687.1 | MF614628_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 134 | 1249 |
| ATE84693.1 | MF614628_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2984 | 3151 |
| ATE84735.1 | MF614628_p49 | methyltransferase | singleton | unknown function | unknown function | 1 | 34491 | 35465 |
| ATE84704.1 | MF614628_p18 | Cro-like protein | singleton | unknown function | unknown function | 1 | 8284 | 8541 |
| ATE84703.1 | MF614628_p17 | CI repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 7488 | 8294 |
| ATE84691.1 | MF614628_p5 | ACSH domain containing protein | phrog_3193 | unknown function | unknown function | -1 | 2224 | 2649 |
| ATE84745.1 | MF614628_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40406 | 41197 |
| ATE84727.1 | MF614628_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25743 | 25853 |
| ATE84732.1 | MF614628_p46 | hypothetical protein | phrog_2134 | unknown function | unknown function | 1 | 29155 | 29577 |
| ATE84728.1 | MF614628_p42 | tail tape measure protein | phrog_8892 | tail length tape measure protein | tail | 1 | 25860 | 27641 |
| ATE84708.1 | MF614628_p22 | hypothetical protein | phrog_10379 | unknown function | unknown function | 1 | 10848 | 11387 |
| ATE84713.1 | MF614628_p27 | transcription antitermination protein | phrog_6386 | transcription antiterminator | transcription regulation | 1 | 14220 | 14888 |
| ATE84719.1 | MF614628_p33 | head maturation protease | phrog_53 | head maturation protease | head and packaging | 1 | 20641 | 22002 |
| ATE84724.1 | MF614628_p38 | minor tail protein U | singleton | unknown function | unknown function | 1 | 24506 | 24946 |
| ATE84699.1 | MF614628_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6403 | 6585 |
| ATE84723.1 | MF614628_p37 | head-to-tail joining protein | phrog_82 | head closure Hc1 | connector | 1 | 24171 | 24503 |
| ATE84698.1 | MF614628_p12 | hypothetical protein | phrog_204 | unknown function | unknown function | -1 | 6034 | 6384 |
| ATE84710.1 | MF614628_p24 | hypothetical protein | phrog_16358 | unknown function | unknown function | 1 | 12055 | 12348 |
| ATE84705.1 | MF614628_p19 | hypothetical protein | phrog_101 | CII-like transcriptional activator | transcription regulation | 1 | 8775 | 9257 |
| ATE84715.1 | MF614628_p29 | terminase small subunit | phrog_141 | terminase small subunit | head and packaging | 1 | 16053 | 16709 |
| ATE84688.1 | MF614628_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1054 | 1455 |
| ATE84731.1 | MF614628_p45 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 28581 | 29165 |
| ATE84718.1 | MF614628_p32 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 19043 | 20644 |
| ATE84733.1 | MF614628_p47 | tail fiber protein | phrog_5616 | tail fiber protein | tail | 1 | 29574 | 31766 |
| ATE84697.1 | MF614628_p11 | hypothetical protein | phrog_210 | unknown function | unknown function | -1 | 5086 | 5997 |
| ATE84694.1 | MF614628_p8 | hypothetical protein | phrog_2045 | unknown function | unknown function | -1 | 3144 | 4340 |
| ATE84725.1 | MF614628_p39 | major tail protein | phrog_1407 | major tail protein | tail | 1 | 24956 | 25351 |
| ATE84737.1 | MF614628_p51 | chitinase | phrog_14712 | chitinase | moron, auxiliary metabolic gene and host takeover | 1 | 35818 | 36780 |
| ATE84692.1 | MF614628_p6 | hypothetical protein | phrog_37182 | unknown function | unknown function | -1 | 2649 | 2987 |
| ATE84712.1 | MF614628_p26 | helix-turn-helix domain-containing protein | phrog_270 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 12989 | 14236 |
| ATE84739.1 | MF614628_p53 | hypothetical protein | phrog_23603 | unknown function | unknown function | 1 | 37148 | 37384 |
| ATE84720.1 | MF614628_p34 | virion structural protein | phrog_1731 | virion structural protein | head and packaging | 1 | 22187 | 22612 |
| ATE84743.1 | MF614628_p57 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 38600 | 39568 |
| ATE84726.1 | MF614628_p40 | tail assembly chaperone | singleton | unknown function | unknown function | 1 | 25348 | 25719 |
| ATE84695.1 | MF614628_p9 | nucleoside triphosphate pyrophosphohydrolase | phrog_4856 | nucleoside triphosphate pyrophosphohydrolase | other | -1 | 4333 | 4677 |
| ATE84689.1 | MF614628_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1449 | 2051 |
| ATE84736.1 | MF614628_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35554 | 35688 |
| ATE84734.1 | MF614628_p48 | tail fiber protein | phrog_38233 | tail fiber protein | tail | 1 | 31805 | 34489 |
| ATE84729.1 | MF614628_p43 | hypothetical protein | phrog_1302 | distal tail protein | tail | 1 | 27641 | 28363 |