| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF668267 |
Definition |
Mycobacterium phage Apocalypse, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
NUCCORE |
Length |
59947 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
98 |
%GC |
66.37 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASZ72694.1 | MF668267_p67 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 43810 | 44319 |
| ASZ72716.1 | MF668267_p90 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 56863 | 57024 |
| ASZ72703.1 | MF668267_p77 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 50800 | 51072 |
| ASZ72649.1 | MF668267_p20 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 12053 | 15886 |
| ASZ72702.1 | MF668267_p76 | hypothetical protein | phrog_4269 | unknown function | unknown function | 1 | 50570 | 50803 |
| ASZ72659.1 | MF668267_p30 | lysin B | phrog_102 | endolysin | lysis | 1 | 26431 | 27303 |
| ASZ72663.1 | MF668267_p34 | exonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28330 | 29538 |
| ASZ72661.1 | MF668267_p32 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 27751 | 28095 |
| ASZ72634.1 | MF668267_p5 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1164 | 1367 |
| ASZ72678.1 | MF668267_p50 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 37365 | 37577 |
| ASZ72726.1 | MF668267_p91 | hypothetical protein | phrog_33361 | unknown function | unknown function | 1 | 57070 | 57195 |
| ASZ72671.1 | MF668267_p43 | integrase | phrog_1 | integrase | integration and excision | 1 | 33493 | 34581 |
| ASZ72684.1 | MF668267_p56 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 40045 | 40428 |
| ASZ72655.1 | MF668267_p26 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 20849 | 23281 |
| ASZ72672.1 | MF668267_p44 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 34685 | 35530 |
| ASZ72681.1 | MF668267_p53 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 38622 | 39491 |
| ASZ72706.1 | MF668267_p80 | hypothetical protein | phrog_5776 | unknown function | unknown function | 1 | 52089 | 52217 |
| ASZ72660.1 | MF668267_p31 | holin | phrog_565 | holin | lysis | 1 | 27314 | 27754 |
| ASZ72700.1 | MF668267_p74 | hypothetical protein | phrog_6689 | unknown function | unknown function | 1 | 49251 | 49454 |
| ASZ72680.1 | MF668267_p52 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 38362 | 38625 |
| ASZ72635.1 | MF668267_p6 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 1360 | 1587 |
| ASZ72636.1 | MF668267_p7 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1571 | 2992 |
| ASZ72705.1 | MF668267_p79 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 51724 | 52002 |
| ASZ72708.1 | MF668267_p82 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 53113 | 53589 |
| ASZ72691.1 | MF668267_p63 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 42202 | 43089 |
| ASZ72690.1 | MF668267_p62 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 42044 | 42205 |
| ASZ72717.1 | MF668267_p92 | hypothetical protein | phrog_5812 | unknown function | unknown function | 1 | 57196 | 57825 |
| ASZ72676.1 | MF668267_p48 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 36678 | 37022 |
| ASZ72701.1 | MF668267_p75 | peptidase | phrog_908 | unknown function | unknown function | 1 | 49451 | 50557 |
| ASZ72644.1 | MF668267_p15 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 9676 | 9957 |
| ASZ72670.1 | MF668267_p42 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 32833 | 33135 |
| ASZ72674.1 | MF668267_p46 | CRO protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 36132 | 36413 |
| ASZ72639.1 | MF668267_p10 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 7069 | 7254 |
| ASZ72640.1 | MF668267_p11 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7291 | 7833 |
| ASZ72721.1 | MF668267_p96 | hypothetical protein | phrog_23176 | unknown function | unknown function | 1 | 58942 | 59412 |
| ASZ72650.1 | MF668267_p21 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15988 | 17124 |
| ASZ72641.1 | MF668267_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7909 | 8844 |
| ASZ72651.1 | MF668267_p22 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17125 | 18891 |
| ASZ72647.1 | MF668267_p19 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11206 | 11643 |
| ASZ72631.1 | MF668267_p2 | hypothetical protein | phrog_5284 | unknown function | unknown function | 1 | 294 | 479 |
| ASZ72677.1 | MF668267_p49 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 37201 | 37368 |
| ASZ72692.1 | MF668267_p64 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 43086 | 43319 |
| ASZ72688.1 | MF668267_p60 | hypothetical protein | phrog_2596 | unknown function | unknown function | 1 | 41464 | 41730 |
| ASZ72673.1 | MF668267_p45 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 35615 | 35992 |
| ASZ72662.1 | MF668267_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28092 | 28343 |
| ASZ72669.1 | MF668267_p41 | hypothetical protein | phrog_32638 | unknown function | unknown function | 1 | 32592 | 32789 |
| ASZ72713.1 | MF668267_p87 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 55385 | 55750 |
| ASZ72667.1 | MF668267_p39 | hypothetical protein | phrog_38108 | unknown function | unknown function | 1 | 31339 | 31626 |
| ASZ72709.1 | MF668267_p83 | hypothetical protein | phrog_20353 | unknown function | unknown function | 1 | 53564 | 53746 |
| ASZ72698.1 | MF668267_p72 | resolvase | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48102 | 48800 |
| ASZ72712.1 | MF668267_p86 | RNA ligase | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 54198 | 55385 |
| ASZ72697.1 | MF668267_p70 | DNA primase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 45075 | 47693 |
| ASZ72720.1 | MF668267_p95 | hypothetical protein | phrog_6135 | unknown function | unknown function | 1 | 58514 | 58777 |
| ASZ72652.1 | MF668267_p23 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 18891 | 19367 |
| ASZ72683.1 | MF668267_p55 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 39698 | 40048 |
| ASZ72630.1 | MF668267_p1 | hypothetical protein | phrog_4624 | unknown function | unknown function | 1 | 79 | 297 |
| ASZ72699.1 | MF668267_p73 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 48793 | 49254 |
| ASZ72685.1 | MF668267_p57 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 40429 | 40707 |
| ASZ72653.1 | MF668267_p24 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19451 | 20533 |
| ASZ72654.1 | MF668267_p25 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20540 | 20848 |
| ASZ72682.1 | MF668267_p54 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 39503 | 39673 |
| ASZ72724.1 | MF668267_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29570 | 29734 |
| ASZ72643.1 | MF668267_p14 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 9339 | 9695 |
| ASZ72711.1 | MF668267_p85 | hypothetical protein | phrog_6426 | unknown function | unknown function | 1 | 53934 | 54086 |
| ASZ72722.1 | MF668267_p97 | hypothetical protein | phrog_5633 | unknown function | unknown function | 1 | 59406 | 59591 |
| ASZ72658.1 | MF668267_p29 | lysin A | phrog_1519 | endolysin | lysis | 1 | 24779 | 26434 |
| ASZ72668.1 | MF668267_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31617 | 32591 |
| ASZ72714.1 | MF668267_p88 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 55750 | 56301 |
| ASZ72719.1 | MF668267_p94 | HicA-like toxin | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 58179 | 58394 |
| ASZ72666.1 | MF668267_p38 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 30512 | 31201 |
| ASZ72638.1 | MF668267_p9 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4562 | 7072 |
| ASZ72695.1 | MF668267_p68 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 44420 | 44662 |
| ASZ72679.1 | MF668267_p51 | HTH DNA binding domain protein | phrog_2286 | unknown function | unknown function | 1 | 37574 | 38365 |
| ASZ72645.1 | MF668267_p16 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 9954 | 10379 |
| ASZ72704.1 | MF668267_p78 | protease | phrog_1006 | unknown function | unknown function | 1 | 51145 | 51606 |
| ASZ72675.1 | MF668267_p47 | HTH DNA binding protein | phrog_1840 | excisionase | integration and excision | 1 | 36410 | 36676 |
| ASZ72715.1 | MF668267_p89 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 56294 | 56866 |
| ASZ72642.1 | MF668267_p13 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8956 | 9342 |
| ASZ72693.1 | MF668267_p65 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 43395 | 43610 |
| ASZ72723.1 | MF668267_p98 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59588 | 59890 |
| ASZ72718.1 | MF668267_p93 | HicB-like antitoxin | phrog_5243 | unknown function | unknown function | 1 | 57857 | 58057 |
| ASZ72665.1 | MF668267_p37 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 30159 | 30437 |
| ASZ72686.1 | MF668267_p58 | hypothetical protein | phrog_4832 | unknown function | unknown function | 1 | 40704 | 40898 |
| ASZ72707.1 | MF668267_p81 | DNA binding domain protein | phrog_2342 | unknown function | unknown function | 1 | 52214 | 53116 |
| ASZ72664.1 | MF668267_p36 | helix-turn-helix DNA binding domain protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29731 | 30162 |
| ASZ72656.1 | MF668267_p27 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 23293 | 24306 |
| ASZ72725.1 | MF668267_p71 | hypothetical protein | phrog_7662 | unknown function | unknown function | 1 | 47693 | 48049 |
| ASZ72727.1 | MF668267_p66 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 43610 | 43729 |
| ASZ72648.1 | MF668267_p18 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11206 | 12053 |
| ASZ72633.1 | MF668267_p4 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 727 | 954 |
| ASZ72689.1 | MF668267_p61 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 41727 | 42047 |
| ASZ72687.1 | MF668267_p59 | DNA polymerase III subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40910 | 41464 |
| ASZ72637.1 | MF668267_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3004 | 4557 |
| ASZ72632.1 | MF668267_p3 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 476 | 730 |
| ASZ72646.1 | MF668267_p17 | major tail protein | phrog_117 | major tail protein | tail | 1 | 10479 | 11093 |
| ASZ72696.1 | MF668267_p69 | HNH endonuclease | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44662 | 45033 |
| ASZ72657.1 | MF668267_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24390 | 24761 |
| ASZ72710.1 | MF668267_p84 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 53740 | 53937 |