| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF668270 |
Definition |
Mycobacterium phage Emma, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
NUCCORE |
Length |
56418 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
109 |
%GC |
61.32 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASZ72889.1 | MF668270_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4450 | 5043 |
| ASZ72904.1 | MF668270_p22 | minor tail protein | phrog_2005 | minor tail protein | tail | 1 | 23413 | 23667 |
| ASZ72931.1 | MF668270_p51 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 36232 | 36408 |
| ASZ72892.1 | MF668270_p8 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 6446 | 6778 |
| ASZ72977.1 | MF668270_p102 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 52668 | 52865 |
| ASZ72963.1 | MF668270_p87 | MPME protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 48858 | 49163 |
| ASZ72925.1 | MF668270_p44 | integrase | phrog_1 | integrase | integration and excision | 1 | 32666 | 33784 |
| ASZ72947.1 | MF668270_p68 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 42404 | 43693 |
| ASZ72902.1 | MF668270_p20 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 21871 | 23031 |
| ASZ72954.1 | MF668270_p76 | HTH DNA binding protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 45662 | 46567 |
| ASZ72929.1 | MF668270_p48 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 35593 | 35883 |
| ASZ72942.1 | MF668270_p63 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40526 | 40756 |
| ASZ72974.1 | MF668270_p99 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 52064 | 52288 |
| ASZ72945.1 | MF668270_p66 | AAA ATPase | phrog_1366 | unknown function | unknown function | 1 | 41167 | 42048 |
| ASZ72899.1 | MF668270_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14857 | 16566 |
| ASZ72978.1 | MF668270_p103 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 52862 | 53275 |
| ASZ72933.1 | MF668270_p54 | hypothetical protein | phrog_3416 | unknown function | unknown function | 1 | 37254 | 37994 |
| ASZ72887.1 | MF668270_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| ASZ72972.1 | MF668270_p97 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 51053 | 51316 |
| ASZ72905.1 | MF668270_p23 | minor tail protein | phrog_2012 | minor tail protein | tail | 1 | 23681 | 24319 |
| ASZ72906.1 | MF668270_p24 | minor tail protein | phrog_754 | minor tail protein | tail | 1 | 24316 | 25299 |
| ASZ72975.1 | MF668270_p100 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 52285 | 52452 |
| ASZ72951.1 | MF668270_p72 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 45010 | 45171 |
| ASZ72937.1 | MF668270_p58 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38779 | 39114 |
| ASZ72916.1 | MF668270_p34 | holin | phrog_443 | holin | lysis | 1 | 29135 | 29368 |
| ASZ72930.1 | MF668270_p50 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 35972 | 36232 |
| ASZ72896.1 | MF668270_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8576 | 9127 |
| ASZ72921.1 | MF668270_p40 | membrane protein | phrog_1839 | unknown function | unknown function | 1 | 31103 | 31195 |
| ASZ72949.1 | MF668270_p70 | hypothetical protein | phrog_10510 | unknown function | unknown function | 1 | 44637 | 44867 |
| ASZ72934.1 | MF668270_p55 | hypothetical protein | phrog_11849 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 37991 | 38143 |
| ASZ72995.1 | MF668270_p38 | hypothetical protein | phrog_8186 | unknown function | unknown function | 1 | 30789 | 30902 |
| ASZ72913.1 | MF668270_p31 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26666 | 26899 |
| ASZ72967.1 | MF668270_p91 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 49790 | 49969 |
| ASZ72989.1 | MF668270_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8576 | 9512 |
| ASZ72900.1 | MF668270_p18 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17448 | 19985 |
| ASZ72907.1 | MF668270_p25 | helix-turn-helix DNA binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25305 | 25502 |
| ASZ72994.1 | MF668270_p94 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 50498 | 50623 |
| ASZ72971.1 | MF668270_p96 | hypothetical protein | phrog_10123 | unknown function | unknown function | 1 | 50772 | 51056 |
| ASZ72984.1 | MF668270_p109 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 55950 | 56276 |
| ASZ72914.1 | MF668270_p32 | lysin A | phrog_700 | endolysin | lysis | 1 | 26896 | 28128 |
| ASZ72915.1 | MF668270_p33 | lysin B | phrog_102 | endolysin | lysis | 1 | 28128 | 29126 |
| ASZ72924.1 | MF668270_p43 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 32049 | 32237 |
| ASZ72970.1 | MF668270_p95 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 50620 | 50775 |
| ASZ72985.1 | MF668270_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16603 | 17451 |
| ASZ72909.1 | MF668270_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25945 | 26091 |
| ASZ72941.1 | MF668270_p62 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 40374 | 40529 |
| ASZ72891.1 | MF668270_p7 | head-to-tail connector protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5883 | 6449 |
| ASZ72962.1 | MF668270_p86 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 48537 | 48812 |
| ASZ72973.1 | MF668270_p98 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 51313 | 51954 |
| ASZ72912.1 | MF668270_p30 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26455 | 26598 |
| ASZ72922.1 | MF668270_p41 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 31244 | 31756 |
| ASZ72901.1 | MF668270_p19 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19982 | 21868 |
| ASZ72893.1 | MF668270_p9 | head-to-tail connector protein | phrog_1929 | head-tail connector protein | connector | 1 | 6781 | 7110 |
| ASZ72986.1 | MF668270_p52 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 36405 | 36638 |
| ASZ72908.1 | MF668270_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25654 | 25938 |
| ASZ72923.1 | MF668270_p42 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 31807 | 32052 |
| ASZ72966.1 | MF668270_p90 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 49602 | 49793 |
| ASZ72919.1 | MF668270_p37 | DNA polymerase III subunit | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29984 | 30805 |
| ASZ72955.1 | MF668270_p77 | hypothetical protein | phrog_4296 | unknown function | unknown function | 1 | 46564 | 46926 |
| ASZ72927.1 | MF668270_p46 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 34567 | 35235 |
| ASZ72957.1 | MF668270_p80 | hypothetical protein | phrog_7196 | unknown function | unknown function | 1 | 47223 | 47420 |
| ASZ72990.1 | MF668270_p73 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 45152 | 45328 |
| ASZ72918.1 | MF668270_p36 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29764 | 29997 |
| ASZ72946.1 | MF668270_p67 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42045 | 42407 |
| ASZ72958.1 | MF668270_p81 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 47424 | 47612 |
| ASZ72898.1 | MF668270_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13062 | 14771 |
| ASZ72888.1 | MF668270_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2255 | 3625 |
| ASZ72950.1 | MF668270_p71 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 44864 | 45013 |
| ASZ72897.1 | MF668270_p14 | tape measure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9531 | 13061 |
| ASZ72959.1 | MF668270_p82 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 47609 | 47959 |
| ASZ72992.1 | MF668270_p49 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 35880 | 35975 |
| ASZ72988.1 | MF668270_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3612 | 4367 |
| ASZ72911.1 | MF668270_p29 | hypothetical protein | phrog_29761 | unknown function | unknown function | 1 | 26286 | 26447 |
| ASZ72894.1 | MF668270_p10 | head-to-tail connector protein | phrog_813 | head-tail adaptor | connector | 1 | 7097 | 7504 |
| ASZ72938.1 | MF668270_p59 | WhiB family transcription factor | phrog_1333 | unknown function | unknown function | 1 | 39114 | 39515 |
| ASZ72917.1 | MF668270_p35 | membrane protein | phrog_404 | minor tail protein | tail | 1 | 29365 | 29739 |
| ASZ72965.1 | MF668270_p89 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 49477 | 49605 |
| ASZ72944.1 | MF668270_p65 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 40892 | 41170 |
| ASZ72993.1 | MF668270_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48298 | 48540 |
| ASZ72953.1 | MF668270_p75 | hypothetical protein | phrog_5500 | unknown function | unknown function | 1 | 45447 | 45665 |
| ASZ72936.1 | MF668270_p57 | hypothetical protein | phrog_7605 | unknown function | unknown function | 1 | 38587 | 38775 |
| ASZ72979.1 | MF668270_p104 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 53272 | 53514 |
| ASZ72981.1 | MF668270_p106 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53685 | 55121 |
| ASZ72980.1 | MF668270_p105 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 53507 | 53668 |
| ASZ72928.1 | MF668270_p47 | CRO protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 35303 | 35536 |
| ASZ72940.1 | MF668270_p61 | helix-turn-helix DNA binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40009 | 40374 |
| ASZ72969.1 | MF668270_p93 | hypothetical protein | phrog_6676 | unknown function | unknown function | 1 | 50103 | 50501 |
| ASZ72956.1 | MF668270_p78 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 46919 | 47143 |
| ASZ72952.1 | MF668270_p74 | hypothetical protein | phrog_6193 | unknown function | unknown function | 1 | 45328 | 45450 |
| ASZ72939.1 | MF668270_p60 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 39512 | 40012 |
| ASZ72926.1 | MF668270_p45 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33849 | 34301 |
| ASZ72983.1 | MF668270_p108 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55327 | 55950 |
| ASZ72987.1 | MF668270_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 587 | 2224 |
| ASZ72982.1 | MF668270_p107 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 55124 | 55330 |
| ASZ72920.1 | MF668270_p39 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30889 | 31110 |
| ASZ72968.1 | MF668270_p92 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 49966 | 50106 |
| ASZ72932.1 | MF668270_p53 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 36635 | 37219 |
| ASZ72895.1 | MF668270_p11 | major tail protein | phrog_476 | major tail protein | tail | 1 | 7630 | 8439 |
| ASZ72964.1 | MF668270_p88 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 49160 | 49480 |
| ASZ72935.1 | MF668270_p56 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 38174 | 38590 |
| ASZ72910.1 | MF668270_p28 | hypothetical protein | phrog_13008 | unknown function | unknown function | 1 | 26088 | 26228 |
| ASZ72943.1 | MF668270_p64 | hypothetical protein | phrog_11976 | unknown function | unknown function | 1 | 40753 | 40899 |
| ASZ72890.1 | MF668270_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5062 | 5883 |
| ASZ72948.1 | MF668270_p69 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 43700 | 44650 |
| ASZ72960.1 | MF668270_p83 | hypothetical protein | phrog_2591 | unknown function | unknown function | 1 | 47952 | 48143 |
| ASZ72961.1 | MF668270_p84 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 48140 | 48301 |
| ASZ72903.1 | MF668270_p21 | minor tail protein | phrog_240 | head protein | head and packaging | 1 | 23049 | 23390 |
| ASZ72976.1 | MF668270_p101 | hypothetical protein | phrog_6481 | unknown function | unknown function | 1 | 52459 | 52668 |
| ASZ72991.1 | MF668270_p79 | hypothetical protein | phrog_9299 | unknown function | unknown function | 1 | 47140 | 47226 |