| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF668281 |
Definition |
Mycobacterium phage RitaG, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
NUCCORE |
Length |
57789 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
103 |
%GC |
61.6 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASZ73838.1 | MF668281_p64 | DNA methylase | phrog_3008 | DNA methyltransferase | other | 1 | 43625 | 43876 |
| ASZ73869.1 | MF668281_p97 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 54206 | 54607 |
| ASZ73854.1 | MF668281_p82 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 50372 | 50656 |
| ASZ73840.1 | MF668281_p67 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 44242 | 44412 |
| ASZ73786.1 | MF668281_p10 | head-to-tail connector protein | phrog_813 | head-tail adaptor | connector | 1 | 7095 | 7499 |
| ASZ73842.1 | MF668281_p69 | hypothetical protein | phrog_2259 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 44538 | 45191 |
| ASZ73796.1 | MF668281_p20 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 21977 | 23179 |
| ASZ73781.1 | MF668281_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4378 | 5028 |
| ASZ73831.1 | MF668281_p56 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 39193 | 39348 |
| ASZ73825.1 | MF668281_p50 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 36961 | 37239 |
| ASZ73834.1 | MF668281_p59 | DNA recombinase | phrog_1366 | unknown function | unknown function | 1 | 40039 | 41016 |
| ASZ73868.1 | MF668281_p96 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 54018 | 54209 |
| ASZ73818.1 | MF668281_p43 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 33982 | 34608 |
| ASZ73857.1 | MF668281_p85 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 51144 | 51356 |
| ASZ73824.1 | MF668281_p49 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 36197 | 36886 |
| ASZ73787.1 | MF668281_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7534 | 8418 |
| ASZ73828.1 | MF668281_p53 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 38074 | 38559 |
| ASZ73879.1 | MF668281_p75 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 47678 | 47836 |
| ASZ73808.1 | MF668281_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 27960 | 28961 |
| ASZ73878.1 | MF668281_p65 | hypothetical protein | phrog_6573 | unknown function | unknown function | 1 | 43992 | 44099 |
| ASZ73823.1 | MF668281_p48 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 36012 | 36200 |
| ASZ73848.1 | MF668281_p76 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 47840 | 48691 |
| ASZ73855.1 | MF668281_p83 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 50649 | 50927 |
| ASZ73794.1 | MF668281_p18 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17539 | 20091 |
| ASZ73797.1 | MF668281_p21 | minor tail protein | phrog_240 | head protein | head and packaging | 1 | 23203 | 23544 |
| ASZ73809.1 | MF668281_p33 | holin | phrog_443 | holin | lysis | 1 | 28977 | 29210 |
| ASZ73830.1 | MF668281_p55 | helix-turn-helix DNA binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 38831 | 39196 |
| ASZ73876.1 | MF668281_p39 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 31143 | 31307 |
| ASZ73835.1 | MF668281_p60 | hypothetical protein | phrog_4657 | unknown function | unknown function | 1 | 41013 | 41621 |
| ASZ73843.1 | MF668281_p70 | hypothetical protein | phrog_6650 | unknown function | unknown function | 1 | 45188 | 45583 |
| ASZ73871.1 | MF668281_p99 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 54839 | 55000 |
| ASZ73783.1 | MF668281_p7 | head-to-tail connector protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5877 | 6446 |
| ASZ73820.1 | MF668281_p45 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 35014 | 35304 |
| ASZ73860.1 | MF668281_p88 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51807 | 51986 |
| ASZ73856.1 | MF668281_p84 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | 1 | 50924 | 51091 |
| ASZ73791.1 | MF668281_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13155 | 14864 |
| ASZ73833.1 | MF668281_p58 | hypothetical protein | phrog_5168 | unknown function | unknown function | 1 | 39578 | 40042 |
| ASZ73788.1 | MF668281_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8532 | 9056 |
| ASZ73778.1 | MF668281_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 571 | 2208 |
| ASZ73801.1 | MF668281_p25 | HTH DNA-binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25317 | 25514 |
| ASZ73779.1 | MF668281_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2239 | 3609 |
| ASZ73782.1 | MF668281_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5047 | 5868 |
| ASZ73817.1 | MF668281_p42 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33264 | 33719 |
| ASZ73867.1 | MF668281_p95 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 53863 | 54021 |
| ASZ73805.1 | MF668281_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26298 | 26519 |
| ASZ73861.1 | MF668281_p89 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 51991 | 52128 |
| ASZ73800.1 | MF668281_p24 | minor tail protein | phrog_754 | minor tail protein | tail | 1 | 24488 | 25312 |
| ASZ73803.1 | MF668281_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25954 | 26100 |
| ASZ73846.1 | MF668281_p73 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 46813 | 47040 |
| ASZ73827.1 | MF668281_p52 | WhiB family transcription factor | phrog_1333 | unknown function | unknown function | 1 | 37583 | 38077 |
| ASZ73806.1 | MF668281_p30 | hypothetical protein | phrog_5492 | unknown function | unknown function | 1 | 26516 | 26689 |
| ASZ73811.1 | MF668281_p35 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29606 | 29839 |
| ASZ73850.1 | MF668281_p78 | hypothetical protein | phrog_6275 | unknown function | unknown function | 1 | 48948 | 49328 |
| ASZ73853.1 | MF668281_p81 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 49650 | 50375 |
| ASZ73847.1 | MF668281_p74 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 47037 | 47705 |
| ASZ73814.1 | MF668281_p38 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30948 | 31040 |
| ASZ73780.1 | MF668281_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3596 | 4351 |
| ASZ73836.1 | MF668281_p61 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41618 | 41974 |
| ASZ73795.1 | MF668281_p19 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 20088 | 21977 |
| ASZ73851.1 | MF668281_p79 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 49328 | 49522 |
| ASZ73813.1 | MF668281_p37 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30665 | 30955 |
| ASZ73862.1 | MF668281_p90 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 52241 | 52477 |
| ASZ73802.1 | MF668281_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25663 | 25947 |
| ASZ73859.1 | MF668281_p87 | hypothetical protein | phrog_6625 | unknown function | unknown function | 1 | 51520 | 51810 |
| ASZ73877.1 | MF668281_p63 | hypothetical protein | phrog_7789 | unknown function | unknown function | 1 | 43561 | 43650 |
| ASZ73844.1 | MF668281_p71 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 45580 | 46668 |
| ASZ73799.1 | MF668281_p23 | minor tail protein | phrog_2012 | minor tail protein | tail | 1 | 23847 | 24491 |
| ASZ73845.1 | MF668281_p72 | hypothetical protein | phrog_2001 | unknown function | unknown function | 1 | 46694 | 46816 |
| ASZ73874.1 | MF668281_p102 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56669 | 57292 |
| ASZ73863.1 | MF668281_p91 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 52470 | 52721 |
| ASZ73870.1 | MF668281_p98 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 54604 | 54846 |
| ASZ73784.1 | MF668281_p8 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 6443 | 6772 |
| ASZ73821.1 | MF668281_p46 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 35391 | 35588 |
| ASZ73807.1 | MF668281_p31 | lysin A | phrog_700 | endolysin | lysis | 1 | 26686 | 27960 |
| ASZ73866.1 | MF668281_p94 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 53693 | 53857 |
| ASZ73798.1 | MF668281_p22 | minor tail protein | phrog_2005 | minor tail protein | tail | 1 | 23584 | 23838 |
| ASZ73785.1 | MF668281_p9 | head-to-tail connector protein | phrog_1929 | head-tail connector protein | connector | 1 | 6779 | 7105 |
| ASZ73829.1 | MF668281_p54 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 38556 | 38834 |
| ASZ73789.1 | MF668281_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8532 | 9441 |
| ASZ73822.1 | MF668281_p47 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 35632 | 36015 |
| ASZ73816.1 | MF668281_p41 | integrase | phrog_1 | integrase | integration and excision | 1 | 31885 | 33186 |
| ASZ73872.1 | MF668281_p100 | galactosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55027 | 56463 |
| ASZ73832.1 | MF668281_p57 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 39348 | 39581 |
| ASZ73839.1 | MF668281_p66 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 44096 | 44245 |
| ASZ73793.1 | MF668281_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16694 | 17542 |
| ASZ73815.1 | MF668281_p40 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31289 | 31489 |
| ASZ73810.1 | MF668281_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 29207 | 29581 |
| ASZ73873.1 | MF668281_p101 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 56466 | 56672 |
| ASZ73875.1 | MF668281_p103 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 57292 | 57618 |
| ASZ73792.1 | MF668281_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14948 | 16657 |
| ASZ73837.1 | MF668281_p62 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 41971 | 43485 |
| ASZ73819.1 | MF668281_p44 | CRO protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34721 | 34954 |
| ASZ73812.1 | MF668281_p36 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29826 | 30647 |
| ASZ73790.1 | MF668281_p14 | tape measure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9438 | 13154 |
| ASZ73804.1 | MF668281_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26097 | 26231 |
| ASZ73858.1 | MF668281_p86 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 51353 | 51547 |
| ASZ73849.1 | MF668281_p77 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 48688 | 48951 |
| ASZ73852.1 | MF668281_p80 | hypothetical protein | phrog_9840 | unknown function | unknown function | 1 | 49519 | 49650 |
| ASZ73865.1 | MF668281_p93 | MerR-like HTH DNA binding domain protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 53472 | 53696 |
| ASZ73826.1 | MF668281_p51 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 37236 | 37583 |
| ASZ73864.1 | MF668281_p92 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 52718 | 53362 |
| ASZ73777.1 | MF668281_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 108 | 563 |
| ASZ73841.1 | MF668281_p68 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 44390 | 44545 |