| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF668282 |
Definition |
Gordonia phage ShayRa, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Soupsvirus; unclassified Soupsvirus. |
DB of origin |
NUCCORE |
Length |
51238 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
62.05 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASZ73914.1 | MF668282_p35 | dsDNA partitioning protein | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 25360 | 25674 |
| ASZ73940.1 | MF668282_p61 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 37358 | 37627 |
| ASZ73909.1 | MF668282_p30 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 21527 | 21868 |
| ASZ73900.1 | MF668282_p21 | head-to-tail connector protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13538 | 13906 |
| ASZ73966.1 | MF668282_p87 | hypothetical protein | phrog_14026 | unknown function | unknown function | -1 | 46663 | 46830 |
| ASZ73933.1 | MF668282_p54 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32881 | 34944 |
| ASZ73890.1 | MF668282_p11 | holin | phrog_13682 | holin | lysis | 1 | 6565 | 6792 |
| ASZ73964.1 | MF668282_p85 | hypothetical protein | phrog_12613 | unknown function | unknown function | -1 | 46262 | 46432 |
| ASZ73905.1 | MF668282_p26 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16045 | 18231 |
| ASZ73926.1 | MF668282_p47 | hypothetical protein | phrog_13814 | transcriptional regulator | transcription regulation | -1 | 30304 | 30540 |
| ASZ73889.1 | MF668282_p10 | lysin A | phrog_2998 | endolysin | lysis | 1 | 5514 | 6554 |
| ASZ73880.1 | MF668282_p1 | DNA binding protein | singleton | unknown function | unknown function | 1 | 438 | 590 |
| ASZ73885.1 | MF668282_p6 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 2757 | 3212 |
| ASZ73886.1 | MF668282_p7 | tail protein | phrog_1126 | unknown function | unknown function | 1 | 3229 | 3564 |
| ASZ73925.1 | MF668282_p46 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 29945 | 30304 |
| ASZ73960.1 | MF668282_p81 | hypothetical protein | phrog_14317 | unknown function | unknown function | -1 | 44942 | 45214 |
| ASZ73894.1 | MF668282_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10872 | 11384 |
| ASZ73968.1 | MF668282_p89 | hypothetical protein | phrog_9204 | unknown function | unknown function | -1 | 47127 | 47246 |
| ASZ73973.1 | MF668282_p94 | hypothetical protein | phrog_14166 | unknown function | unknown function | -1 | 48825 | 49055 |
| ASZ73932.1 | MF668282_p53 | membrane protein | phrog_13800 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 32783 | 32896 |
| ASZ73972.1 | MF668282_p93 | hypothetical protein | phrog_9027 | unknown function | unknown function | -1 | 48625 | 48822 |
| ASZ73883.1 | MF668282_p4 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 2129 | 2428 |
| ASZ73920.1 | MF668282_p41 | hypothetical protein | phrog_13673 | unknown function | unknown function | -1 | 26990 | 27223 |
| ASZ73921.1 | MF668282_p42 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 27216 | 27464 |
| ASZ73937.1 | MF668282_p58 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 35993 | 36757 |
| ASZ73976.1 | MF668282_p97 | hypothetical protein | phrog_13265 | unknown function | unknown function | -1 | 49458 | 49742 |
| ASZ73899.1 | MF668282_p20 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 13170 | 13538 |
| ASZ73947.1 | MF668282_p68 | membrane protein | phrog_13833 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 39955 | 40068 |
| ASZ73948.1 | MF668282_p69 | membrane protein | phrog_14261 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 40065 | 40163 |
| ASZ73896.1 | MF668282_p17 | head-to-tail connector protein | phrog_748 | head-tail connector protein | connector | 1 | 12438 | 12608 |
| ASZ73967.1 | MF668282_p88 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 46885 | 47127 |
| ASZ73881.1 | MF668282_p2 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 577 | 1407 |
| ASZ73906.1 | MF668282_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18241 | 19218 |
| ASZ73953.1 | MF668282_p74 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41777 | 42607 |
| ASZ73882.1 | MF668282_p3 | VIP2-like toxin | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1245 | 2132 |
| ASZ73907.1 | MF668282_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19215 | 21002 |
| ASZ73942.1 | MF668282_p63 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37833 | 38447 |
| ASZ73969.1 | MF668282_p90 | hypothetical protein | phrog_13953 | unknown function | unknown function | -1 | 47243 | 47656 |
| ASZ73884.1 | MF668282_p5 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2425 | 2721 |
| ASZ73903.1 | MF668282_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15070 | 15453 |
| ASZ73956.1 | MF668282_p77 | helix-turn-helix DNA binding domain protein | phrog_520 | unknown function | unknown function | -1 | 43047 | 43325 |
| ASZ73924.1 | MF668282_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28154 | 29944 |
| ASZ73961.1 | MF668282_p82 | protease | phrog_1006 | unknown function | unknown function | -1 | 45211 | 45678 |
| ASZ73952.1 | MF668282_p73 | hypothetical protein | phrog_13179 | unknown function | unknown function | -1 | 41246 | 41734 |
| ASZ73902.1 | MF668282_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14354 | 14956 |
| ASZ73911.1 | MF668282_p32 | DNA bridging protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | 1 | 23657 | 24013 |
| ASZ73935.1 | MF668282_p56 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35129 | 35311 |
| ASZ73945.1 | MF668282_p66 | lysin B | phrog_6187 | unknown function | unknown function | -1 | 38881 | 39516 |
| ASZ73893.1 | MF668282_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9959 | 10819 |
| ASZ73955.1 | MF668282_p76 | hypothetical protein | phrog_10900 | unknown function | unknown function | -1 | 42856 | 43050 |
| ASZ73892.1 | MF668282_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8502 | 9962 |
| ASZ73908.1 | MF668282_p29 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 21087 | 21530 |
| ASZ73946.1 | MF668282_p67 | endonuclease VII | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39513 | 39881 |
| ASZ73904.1 | MF668282_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15070 | 15974 |
| ASZ73944.1 | MF668282_p65 | hypothetical protein | phrog_13497 | unknown function | unknown function | -1 | 38702 | 38881 |
| ASZ73936.1 | MF668282_p57 | HTH DNA binding domain protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35295 | 35867 |
| ASZ73915.1 | MF668282_p36 | membrane protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 25726 | 25965 |
| ASZ73922.1 | MF668282_p43 | hypothetical protein | phrog_13791 | unknown function | unknown function | -1 | 27464 | 27688 |
| ASZ73949.1 | MF668282_p70 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40206 | 40604 |
| ASZ73895.1 | MF668282_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11417 | 12367 |
| ASZ73916.1 | MF668282_p37 | hypothetical protein | phrog_11556 | unknown function | unknown function | 1 | 25962 | 26144 |
| ASZ73970.1 | MF668282_p91 | hypothetical protein | phrog_2554 | unknown function | unknown function | -1 | 47687 | 48415 |
| ASZ73917.1 | MF668282_p38 | hypothetical protein | phrog_25843 | unknown function | unknown function | -1 | 26294 | 26470 |
| ASZ73962.1 | MF668282_p83 | hypothetical protein | phrog_12580 | unknown function | unknown function | -1 | 45793 | 46074 |
| ASZ73927.1 | MF668282_p48 | HTH DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30537 | 30830 |
| ASZ73941.1 | MF668282_p62 | hypothetical protein | phrog_13334 | unknown function | unknown function | -1 | 37624 | 37836 |
| ASZ73898.1 | MF668282_p19 | head-to-tail connector protein | phrog_830 | head-tail connector protein | connector | 1 | 12986 | 13183 |
| ASZ73888.1 | MF668282_p9 | tail protein | phrog_356 | minor tail protein | tail | 1 | 4550 | 5224 |
| ASZ73951.1 | MF668282_p72 | hypothetical protein | phrog_762 | unknown function | unknown function | -1 | 40797 | 41213 |
| ASZ73887.1 | MF668282_p8 | tail protein | phrog_1197 | tail protein | tail | 1 | 3561 | 4553 |
| ASZ73912.1 | MF668282_p33 | hypothetical protein | phrog_4480 | unknown function | unknown function | 1 | 24010 | 24318 |
| ASZ73901.1 | MF668282_p22 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 13919 | 14329 |
| ASZ73931.1 | MF668282_p52 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32223 | 32786 |
| ASZ73923.1 | MF668282_p44 | hypothetical protein | phrog_16184 | unknown function | unknown function | -1 | 27685 | 28140 |
| ASZ73974.1 | MF668282_p95 | hypothetical protein | phrog_13636 | unknown function | unknown function | -1 | 49058 | 49243 |
| ASZ73934.1 | MF668282_p55 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 34941 | 35132 |
| ASZ73943.1 | MF668282_p64 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38296 | 38676 |
| ASZ73958.1 | MF668282_p79 | RecB-like recombinase | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43753 | 44601 |
| ASZ73938.1 | MF668282_p59 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 36754 | 37188 |
| ASZ73919.1 | MF668282_p40 | hypothetical protein | phrog_14604 | unknown function | unknown function | -1 | 26856 | 26990 |
| ASZ73950.1 | MF668282_p71 | membrane protein | phrog_1374 | unknown function | unknown function | -1 | 40615 | 40794 |
| ASZ73971.1 | MF668282_p92 | hypothetical protein | phrog_18197 | unknown function | unknown function | -1 | 48405 | 48548 |
| ASZ73957.1 | MF668282_p78 | HNH endonuclease | phrog_4160 | unknown function | unknown function | -1 | 43352 | 43741 |
| ASZ73963.1 | MF668282_p84 | hypothetical protein | phrog_9830 | unknown function | unknown function | -1 | 46077 | 46262 |
| ASZ73954.1 | MF668282_p75 | hypothetical protein | phrog_9751 | unknown function | unknown function | -1 | 42672 | 42845 |
| ASZ73965.1 | MF668282_p86 | hypothetical protein | phrog_15584 | unknown function | unknown function | -1 | 46478 | 46660 |
| ASZ73918.1 | MF668282_p39 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 26467 | 26856 |
| ASZ73929.1 | MF668282_p50 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 31066 | 31764 |
| ASZ73939.1 | MF668282_p60 | hypothetical protein | phrog_4589 | unknown function | unknown function | -1 | 37185 | 37361 |
| ASZ73928.1 | MF668282_p49 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 30827 | 31057 |
| ASZ73975.1 | MF668282_p96 | hypothetical protein | phrog_7225 | unknown function | unknown function | -1 | 49245 | 49454 |
| ASZ73891.1 | MF668282_p12 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 6808 | 8505 |
| ASZ73897.1 | MF668282_p18 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12612 | 12989 |
| ASZ73913.1 | MF668282_p34 | dsDNA partitioning protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 24801 | 25367 |
| ASZ73959.1 | MF668282_p80 | hypothetical protein | phrog_13943 | unknown function | unknown function | -1 | 44710 | 44958 |
| ASZ73910.1 | MF668282_p31 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 21865 | 23577 |
| ASZ73930.1 | MF668282_p51 | nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | -1 | 31761 | 32105 |