| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF668283 |
Definition |
Mycobacterium phage Smairt, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
54655 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
100 |
%GC |
63.55 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASZ74032.1 | MF668283_p65 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 43635 | 44444 |
| ASZ74071.1 | MF668283_p60 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 41195 | 41359 |
| ASZ74023.1 | MF668283_p52 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37155 | 37295 |
| ASZ73988.1 | MF668283_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9129 | 10571 |
| ASZ74070.1 | MF668283_p45 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32797 | 33153 |
| ASZ74018.1 | MF668283_p47 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33637 | 35424 |
| ASZ74016.1 | MF668283_p44 | hypothetical protein | phrog_9480 | unknown function | unknown function | -1 | 32504 | 32800 |
| ASZ74038.1 | MF668283_p71 | hypothetical protein | phrog_13492 | unknown function | unknown function | -1 | 46125 | 46376 |
| ASZ74067.1 | MF668283_p92 | hypothetical protein | phrog_17684 | unknown function | unknown function | -1 | 51913 | 52026 |
| ASZ74069.1 | MF668283_p38 | integrase | phrog_95 | integrase | integration and excision | 1 | 29608 | 31107 |
| ASZ74019.1 | MF668283_p48 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35461 | 35691 |
| ASZ73989.1 | MF668283_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10568 | 11449 |
| ASZ74003.1 | MF668283_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21861 | 23663 |
| ASZ74044.1 | MF668283_p79 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 48602 | 49288 |
| ASZ73995.1 | MF668283_p20 | head-to-tail connector protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14470 | 14865 |
| ASZ74020.1 | MF668283_p49 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35722 | 36201 |
| ASZ74045.1 | MF668283_p80 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49389 | 49688 |
| ASZ74041.1 | MF668283_p74 | helix-turn-helix DNA binding domain protein | phrog_11473 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 46837 | 47319 |
| ASZ74030.1 | MF668283_p62 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 41627 | 42808 |
| ASZ74015.1 | MF668283_p43 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32412 | 32507 |
| ASZ74039.1 | MF668283_p72 | hypothetical protein | phrog_12594 | unknown function | unknown function | -1 | 46373 | 46540 |
| ASZ74026.1 | MF668283_p55 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 39191 | 39592 |
| ASZ73987.1 | MF668283_p12 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7444 | 9132 |
| ASZ74033.1 | MF668283_p66 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 44431 | 44577 |
| ASZ74001.1 | MF668283_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19603 | 21660 |
| ASZ74073.1 | MF668283_p78 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 48161 | 48556 |
| ASZ74066.1 | MF668283_p75 | zinc finger domain protein | phrog_14169 | zinc-finger domain protein | other | -1 | 47309 | 47536 |
| ASZ74012.1 | MF668283_p40 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 31497 | 31886 |
| ASZ73991.1 | MF668283_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12031 | 13050 |
| ASZ74050.1 | MF668283_p86 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 50734 | 50922 |
| ASZ74013.1 | MF668283_p41 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 31883 | 32245 |
| ASZ74057.1 | MF668283_p95 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 52686 | 52805 |
| ASZ73996.1 | MF668283_p21 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 14869 | 15315 |
| ASZ74063.1 | MF668283_p98 | hypothetical protein | phrog_17708 | unknown function | unknown function | 1 | 53414 | 53575 |
| ASZ73980.1 | MF668283_p4 | hypothetical protein | phrog_18747 | unknown function | unknown function | 1 | 2007 | 2321 |
| ASZ74074.1 | MF668283_p81 | hypothetical protein | phrog_6474 | recombination directionality factor | integration and excision | -1 | 49681 | 49860 |
| ASZ74053.1 | MF668283_p90 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 51536 | 51685 |
| ASZ73982.1 | MF668283_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3793 | 4494 |
| ASZ74022.1 | MF668283_p51 | RNA polymerase sigma factor | phrog_354 | sigma-K factor | transcription regulation | -1 | 36377 | 37162 |
| ASZ73985.1 | MF668283_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 5033 | 6466 |
| ASZ74037.1 | MF668283_p70 | exonuclease/helicase | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 45325 | 46125 |
| ASZ73990.1 | MF668283_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11508 | 12020 |
| ASZ73986.1 | MF668283_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6456 | 7424 |
| ASZ74010.1 | MF668283_p37 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 28913 | 29458 |
| ASZ74061.1 | MF668283_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2391 | 2522 |
| ASZ74055.1 | MF668283_p93 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 52124 | 52471 |
| ASZ74006.1 | MF668283_p32 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24813 | 26666 |
| ASZ74021.1 | MF668283_p50 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36198 | 36380 |
| ASZ73984.1 | MF668283_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4776 | 5033 |
| ASZ74025.1 | MF668283_p54 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 39015 | 39194 |
| ASZ74034.1 | MF668283_p67 | hypothetical protein | phrog_780 | unknown function | unknown function | -1 | 44574 | 44819 |
| ASZ74075.1 | MF668283_p87 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 50922 | 51089 |
| ASZ74072.1 | MF668283_p64 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 43369 | 43635 |
| ASZ74060.1 | MF668283_p100 | hypothetical protein | phrog_15028 | unknown function | unknown function | 1 | 53962 | 54558 |
| ASZ73998.1 | MF668283_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16297 | 16674 |
| ASZ73993.1 | MF668283_p18 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13659 | 14108 |
| ASZ74049.1 | MF668283_p85 | hypothetical protein | phrog_3447 | unknown function | unknown function | -1 | 50525 | 50737 |
| ASZ74007.1 | MF668283_p33 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26659 | 28140 |
| ASZ74054.1 | MF668283_p91 | hypothetical protein | phrog_17848 | unknown function | unknown function | -1 | 51682 | 51852 |
| ASZ73981.1 | MF668283_p6 | tail protein | phrog_1197 | tail protein | tail | 1 | 2713 | 3783 |
| ASZ74059.1 | MF668283_p97 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 53160 | 53366 |
| ASZ74031.1 | MF668283_p63 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 42805 | 43299 |
| ASZ73978.1 | MF668283_p2 | HNH endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 926 | 1435 |
| ASZ74002.1 | MF668283_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21679 | 21861 |
| ASZ74011.1 | MF668283_p39 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31228 | 31500 |
| ASZ74062.1 | MF668283_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28771 | 29358 |
| ASZ73994.1 | MF668283_p19 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 14108 | 14470 |
| ASZ74048.1 | MF668283_p84 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 50325 | 50528 |
| ASZ74046.1 | MF668283_p82 | hypothetical protein | phrog_26295 | unknown function | unknown function | -1 | 49868 | 50062 |
| ASZ74052.1 | MF668283_p89 | hypothetical protein | phrog_8345 | unknown function | unknown function | -1 | 51310 | 51516 |
| ASZ73999.1 | MF668283_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16297 | 17096 |
| ASZ74043.1 | MF668283_p77 | hypothetical protein | phrog_3851 | unknown function | unknown function | -1 | 47847 | 48164 |
| ASZ74051.1 | MF668283_p88 | hypothetical protein | phrog_11336 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 51119 | 51313 |
| ASZ74029.1 | MF668283_p61 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41421 | 41555 |
| ASZ73997.1 | MF668283_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15324 | 16175 |
| ASZ74058.1 | MF668283_p96 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 52921 | 53076 |
| ASZ73992.1 | MF668283_p17 | head-to-tail connector protein | phrog_1857 | head-tail connector protein | connector | 1 | 13129 | 13659 |
| ASZ74047.1 | MF668283_p83 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 50059 | 50328 |
| ASZ74064.1 | MF668283_p58 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40282 | 40827 |
| ASZ74040.1 | MF668283_p73 | hypothetical protein | phrog_12774 | unknown function | unknown function | -1 | 46552 | 46824 |
| ASZ73983.1 | MF668283_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4508 | 4768 |
| ASZ74036.1 | MF668283_p69 | DNA binding protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 45116 | 45298 |
| ASZ74027.1 | MF668283_p56 | hypothetical protein | phrog_5618 | unknown function | unknown function | -1 | 39589 | 39915 |
| ASZ73977.1 | MF668283_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 595 | 891 |
| ASZ74014.1 | MF668283_p42 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32245 | 32415 |
| ASZ73979.1 | MF668283_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1435 | 1875 |
| ASZ74076.1 | MF668283_p99 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 53679 | 53867 |
| ASZ74068.1 | MF668283_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 24159 | 24491 |
| ASZ74017.1 | MF668283_p46 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 33174 | 33659 |
| ASZ74004.1 | MF668283_p29 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23701 | 24147 |
| ASZ74009.1 | MF668283_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28562 | 28771 |
| ASZ74024.1 | MF668283_p53 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37300 | 39018 |
| ASZ74000.1 | MF668283_p25 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17108 | 19579 |
| ASZ74042.1 | MF668283_p76 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 47533 | 47850 |
| ASZ74056.1 | MF668283_p94 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 52471 | 52689 |
| ASZ74065.1 | MF668283_p59 | hypothetical protein | phrog_4160 | unknown function | unknown function | -1 | 40752 | 41216 |
| ASZ74028.1 | MF668283_p57 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39912 | 40436 |
| ASZ74005.1 | MF668283_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24488 | 24787 |
| ASZ74035.1 | MF668283_p68 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 44819 | 45112 |
| ASZ74008.1 | MF668283_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28184 | 28552 |