| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF766044 |
Definition |
Streptomyces phage Amethyst, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Arequatrovirus; unclassified Arequatrovirus. |
DB of origin |
NUCCORE |
Length |
49372 |
Host Name |
Streptomyces xanthochromogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
67.22 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATI18663.1 | MF766044_p41 | hypothetical protein | phrog_10412 | unknown function | unknown function | 1 | 29730 | 29933 |
| ATI18692.1 | MF766044_p72 | hypothetical protein | phrog_16954 | unknown function | unknown function | -1 | 45255 | 45836 |
| ATI18656.1 | MF766044_p34 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 26390 | 26875 |
| ATI18671.1 | MF766044_p49 | hypothetical protein | phrog_15135 | unknown function | unknown function | -1 | 35178 | 35426 |
| ATI18676.1 | MF766044_p54 | hypothetical protein | phrog_22014 | unknown function | unknown function | -1 | 39271 | 39405 |
| ATI18651.1 | MF766044_p29 | immunity repressor | phrog_3929 | transcriptional repressor | transcription regulation | 1 | 23241 | 23708 |
| ATI18690.1 | MF766044_p70 | hypothetical protein | phrog_31321 | unknown function | unknown function | -1 | 44729 | 45028 |
| ATI18660.1 | MF766044_p38 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28284 | 28715 |
| ATI18634.1 | MF766044_p12 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 8604 | 8945 |
| ATI18688.1 | MF766044_p68 | hypothetical protein | phrog_4239 | unknown function | unknown function | -1 | 43766 | 44179 |
| ATI18659.1 | MF766044_p37 | hypothetical protein | phrog_4673 | unknown function | unknown function | 1 | 28135 | 28287 |
| ATI18632.1 | MF766044_p10 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 7012 | 8058 |
| ATI18626.1 | MF766044_p4 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 1422 | 1682 |
| ATI18623.1 | MF766044_p1 | hypothetical protein | phrog_4207 | unknown function | unknown function | -1 | 35 | 220 |
| ATI18624.1 | MF766044_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 650 | 964 |
| ATI18631.1 | MF766044_p9 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6407 | 6937 |
| ATI18628.1 | MF766044_p6 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2142 | 3791 |
| ATI18635.1 | MF766044_p13 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 8945 | 9406 |
| ATI18698.1 | MF766044_p79 | hypothetical protein | phrog_11579 | unknown function | unknown function | -1 | 47976 | 48371 |
| ATI18674.1 | MF766044_p52 | hypothetical protein | phrog_9533 | unknown function | unknown function | -1 | 38376 | 38564 |
| ATI18696.1 | MF766044_p77 | hypothetical protein | phrog_9864 | unknown function | unknown function | -1 | 47560 | 47739 |
| ATI18625.1 | MF766044_p3 | hypothetical protein | phrog_3555 | unknown function | unknown function | 1 | 1195 | 1425 |
| ATI18682.1 | MF766044_p61 | hypothetical protein | phrog_4024 | unknown function | unknown function | -1 | 41397 | 41603 |
| ATI18637.1 | MF766044_p15 | major tail protein | phrog_117 | major tail protein | tail | 1 | 9916 | 10656 |
| ATI18630.1 | MF766044_p8 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 5298 | 6404 |
| ATI18639.1 | MF766044_p16 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 10807 | 11537 |
| ATI18680.1 | MF766044_p59 | hypothetical protein | phrog_3965 | unknown function | unknown function | -1 | 40607 | 41110 |
| ATI18700.1 | MF766044_p66 | hypothetical protein | phrog_14620 | unknown function | unknown function | -1 | 43123 | 43542 |
| ATI18693.1 | MF766044_p73 | hypothetical protein | phrog_3842 | unknown function | unknown function | -1 | 45931 | 46722 |
| ATI18687.1 | MF766044_p67 | hypothetical protein | phrog_3908 | unknown function | unknown function | -1 | 43539 | 43769 |
| ATI18689.1 | MF766044_p69 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 44302 | 44727 |
| ATI18665.1 | MF766044_p43 | endonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 30138 | 31340 |
| ATI18670.1 | MF766044_p48 | hypothetical protein | phrog_10944 | unknown function | unknown function | -1 | 34942 | 35181 |
| ATI18638.1 | MF766044_p17 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 10807 | 11148 |
| ATI18633.1 | MF766044_p11 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8131 | 8607 |
| ATI18678.1 | MF766044_p56 | hypothetical protein | phrog_11485 | unknown function | unknown function | -1 | 39704 | 40216 |
| ATI18672.1 | MF766044_p50 | helix-turn-helix DNA binding domain protein | phrog_5823 | transcriptional regulator | transcription regulation | -1 | 35520 | 36749 |
| ATI18684.1 | MF766044_p63 | hypothetical protein | phrog_3991 | unknown function | unknown function | -1 | 42170 | 42442 |
| ATI18669.1 | MF766044_p47 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 32641 | 34839 |
| ATI18636.1 | MF766044_p14 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9406 | 9903 |
| ATI18654.1 | MF766044_p32 | hypothetical protein | phrog_3912 | unknown function | unknown function | 1 | 25324 | 25806 |
| ATI18675.1 | MF766044_p53 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 38561 | 39274 |
| ATI18683.1 | MF766044_p62 | dNMP kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 41593 | 42177 |
| ATI18662.1 | MF766044_p40 | hypothetical protein | phrog_4022 | unknown function | unknown function | 1 | 29395 | 29733 |
| ATI18666.1 | MF766044_p44 | hypothetical protein | phrog_1340 | unknown function | unknown function | 1 | 31337 | 31699 |
| ATI18695.1 | MF766044_p75 | hypothetical protein | phrog_12223 | unknown function | unknown function | -1 | 46914 | 47045 |
| ATI18646.1 | MF766044_p24 | minor tail protein | phrog_988 | tail protein | tail | 1 | 19937 | 21211 |
| ATI18653.1 | MF766044_p31 | exonuclease | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 24241 | 25203 |
| ATI18629.1 | MF766044_p7 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3826 | 5301 |
| ATI18697.1 | MF766044_p78 | hypothetical protein | phrog_20053 | unknown function | unknown function | -1 | 47742 | 47975 |
| ATI18627.1 | MF766044_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1696 | 2130 |
| ATI18681.1 | MF766044_p60 | hypothetical protein | phrog_19723 | unknown function | unknown function | -1 | 41107 | 41400 |
| ATI18685.1 | MF766044_p64 | hypothetical protein | phrog_13837 | unknown function | unknown function | -1 | 42439 | 42756 |
| ATI18668.1 | MF766044_p46 | hypothetical protein | phrog_4123 | unknown function | unknown function | 1 | 32076 | 32564 |
| ATI18661.1 | MF766044_p39 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28730 | 29392 |
| ATI18650.1 | MF766044_p28 | hypothetical protein | phrog_4061 | unknown function | unknown function | -1 | 22789 | 23127 |
| ATI18677.1 | MF766044_p55 | hypothetical protein | phrog_4071 | unknown function | unknown function | -1 | 39398 | 39703 |
| ATI18655.1 | MF766044_p33 | hypothetical protein | phrog_1288 | unknown function | unknown function | 1 | 25879 | 26316 |
| ATI18641.1 | MF766044_p19 | minor tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 15455 | 16312 |
| ATI18701.1 | MF766044_p76 | hypothetical protein | phrog_2563 | unknown function | unknown function | -1 | 47093 | 47476 |
| ATI18664.1 | MF766044_p42 | hypothetical protein | phrog_3979 | unknown function | unknown function | 1 | 29984 | 30145 |
| ATI18658.1 | MF766044_p36 | holliday junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 27761 | 28138 |
| ATI18649.1 | MF766044_p27 | hypothetical protein | phrog_4092 | unknown function | unknown function | 1 | 22528 | 22740 |
| ATI18642.1 | MF766044_p20 | minor tail protein | phrog_538 | minor tail protein | tail | 1 | 16313 | 17527 |
| ATI18652.1 | MF766044_p30 | hypothetical protein | phrog_5250 | unknown function | unknown function | 1 | 23945 | 24244 |
| ATI18686.1 | MF766044_p65 | hypothetical protein | phrog_3994 | unknown function | unknown function | -1 | 42858 | 43154 |
| ATI18694.1 | MF766044_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46706 | 46810 |
| ATI18691.1 | MF766044_p71 | hypothetical protein | phrog_4275 | unknown function | unknown function | -1 | 45028 | 45168 |
| ATI18643.1 | MF766044_p21 | hypothetical protein | phrog_1276 | unknown function | unknown function | 1 | 17528 | 17833 |
| ATI18657.1 | MF766044_p35 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 26812 | 27696 |
| ATI18699.1 | MF766044_p57 | hypothetical protein | phrog_15765 | unknown function | unknown function | -1 | 40213 | 40374 |
| ATI18647.1 | MF766044_p25 | hypothetical protein | phrog_3534 | unknown function | unknown function | 1 | 21208 | 21561 |
| ATI18645.1 | MF766044_p23 | hypothetical protein | phrog_9468 | unknown function | unknown function | 1 | 19487 | 19861 |
| ATI18640.1 | MF766044_p18 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 11541 | 15449 |
| ATI18667.1 | MF766044_p45 | helix-turn-helix DNA binding domain protein | phrog_3512 | sigma factor | transcription regulation | 1 | 31696 | 32079 |
| ATI18679.1 | MF766044_p58 | hypothetical protein | phrog_3424 | unknown function | unknown function | -1 | 40371 | 40610 |
| ATI18673.1 | MF766044_p51 | integrase | phrog_95 | integrase | integration and excision | 1 | 36872 | 38293 |
| ATI18644.1 | MF766044_p22 | hypothetical protein | phrog_4013 | unknown function | unknown function | 1 | 17833 | 19476 |
| ATI18648.1 | MF766044_p26 | lysin | phrog_880 | endolysin | lysis | 1 | 21581 | 22531 |