| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF766047 |
Definition |
Streptomyces phage SqueakyClean, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Arequatrovirus; unclassified Arequatrovirus. |
DB of origin |
NUCCORE |
Length |
50837 |
Host Name |
Streptomyces xanthochromogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
78 |
%GC |
67.02 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATI18884.1 | MF766047_p21 | minor tail protein | phrog_538 | minor tail protein | tail | 1 | 15829 | 17040 |
| ATI18875.1 | MF766047_p12 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8473 | 8961 |
| ATI18910.1 | MF766047_p47 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 32968 | 35091 |
| ATI18904.1 | MF766047_p41 | hypothetical protein | phrog_10412 | unknown function | unknown function | 1 | 30148 | 30357 |
| ATI18886.1 | MF766047_p23 | hypothetical protein | phrog_4013 | unknown function | unknown function | 1 | 17343 | 19529 |
| ATI18865.1 | MF766047_p2 | helix-turn-helix DNA binding domain protein | phrog_9285 | unknown function | unknown function | -1 | 292 | 651 |
| ATI18913.1 | MF766047_p50 | helix-turn-helix DNA binding domain protein | phrog_5823 | transcriptional regulator | transcription regulation | -1 | 35751 | 36929 |
| ATI18939.1 | MF766047_p76 | hypothetical protein | phrog_2563 | unknown function | unknown function | -1 | 48630 | 49007 |
| ATI18933.1 | MF766047_p70 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 45846 | 46271 |
| ATI18900.1 | MF766047_p37 | hypothetical protein | phrog_4673 | unknown function | unknown function | 1 | 28555 | 28692 |
| ATI18938.1 | MF766047_p75 | hypothetical protein | phrog_20423 | unknown function | unknown function | -1 | 48390 | 48584 |
| ATI18897.1 | MF766047_p34 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 26829 | 27302 |
| ATI18879.1 | MF766047_p16 | major tail protein | phrog_117 | major tail protein | tail | 1 | 10181 | 10921 |
| ATI18941.1 | MF766047_p78 | hypothetical protein | phrog_11579 | unknown function | unknown function | -1 | 49371 | 49760 |
| ATI18891.1 | MF766047_p28 | hypothetical protein | phrog_4092 | unknown function | unknown function | 1 | 22784 | 22990 |
| ATI18887.1 | MF766047_p24 | hypothetical protein | phrog_4817 | unknown function | unknown function | 1 | 19542 | 20036 |
| ATI18877.1 | MF766047_p14 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 9299 | 9670 |
| ATI18934.1 | MF766047_p71 | hypothetical protein | phrog_4275 | unknown function | unknown function | -1 | 46289 | 46432 |
| ATI18918.1 | MF766047_p55 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 39706 | 40419 |
| ATI18902.1 | MF766047_p39 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 29137 | 29796 |
| ATI18876.1 | MF766047_p13 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 8958 | 9299 |
| ATI18928.1 | MF766047_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43514 | 43843 |
| ATI18895.1 | MF766047_p32 | hypothetical protein | phrog_3912 | unknown function | unknown function | 1 | 25751 | 26233 |
| ATI18871.1 | MF766047_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 4130 | 5617 |
| ATI18912.1 | MF766047_p49 | hypothetical protein | phrog_15135 | unknown function | unknown function | -1 | 35428 | 35673 |
| ATI18899.1 | MF766047_p36 | holliday junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28181 | 28558 |
| ATI18896.1 | MF766047_p33 | hypothetical protein | phrog_1288 | unknown function | unknown function | 1 | 26311 | 26748 |
| ATI18898.1 | MF766047_p35 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 27239 | 28117 |
| ATI18880.1 | MF766047_p18 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 11033 | 11374 |
| ATI18903.1 | MF766047_p40 | hypothetical protein | phrog_4022 | unknown function | unknown function | 1 | 29801 | 30151 |
| ATI18878.1 | MF766047_p15 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9670 | 10167 |
| ATI18935.1 | MF766047_p72 | hypothetical protein | phrog_16954 | unknown function | unknown function | -1 | 46519 | 47094 |
| ATI18866.1 | MF766047_p3 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1027 | 1341 |
| ATI18885.1 | MF766047_p22 | hypothetical protein | phrog_1276 | unknown function | unknown function | 1 | 17040 | 17342 |
| ATI18906.1 | MF766047_p43 | endonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 30580 | 31779 |
| ATI18894.1 | MF766047_p31 | exonuclease | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 24658 | 25632 |
| ATI18870.1 | MF766047_p7 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2449 | 4095 |
| ATI18940.1 | MF766047_p77 | hypothetical protein | phrog_4485 | unknown function | unknown function | -1 | 49101 | 49262 |
| ATI18893.1 | MF766047_p30 | immunity repressor | phrog_3929 | transcriptional repressor | transcription regulation | 1 | 23485 | 23943 |
| ATI18869.1 | MF766047_p6 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2000 | 2431 |
| ATI18882.1 | MF766047_p19 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 11767 | 14964 |
| ATI18867.1 | MF766047_p4 | hypothetical protein | phrog_3555 | unknown function | unknown function | 1 | 1499 | 1729 |
| ATI18911.1 | MF766047_p48 | hypothetical protein | phrog_10944 | unknown function | unknown function | -1 | 35192 | 35431 |
| ATI18922.1 | MF766047_p59 | hypothetical protein | phrog_3424 | unknown function | unknown function | -1 | 41334 | 41591 |
| ATI18932.1 | MF766047_p69 | hypothetical protein | phrog_3908 | unknown function | unknown function | -1 | 45510 | 45722 |
| ATI18927.1 | MF766047_p64 | hypothetical protein | phrog_3991 | unknown function | unknown function | -1 | 43269 | 43517 |
| ATI18916.1 | MF766047_p53 | hypothetical protein | phrog_29094 | unknown function | unknown function | -1 | 39402 | 39512 |
| ATI18889.1 | MF766047_p26 | hypothetical protein | phrog_3534 | unknown function | unknown function | 1 | 21339 | 21692 |
| ATI18907.1 | MF766047_p44 | hypothetical protein | phrog_1340 | unknown function | unknown function | 1 | 31776 | 32138 |
| ATI18936.1 | MF766047_p73 | hypothetical protein | phrog_3842 | unknown function | unknown function | -1 | 47191 | 47904 |
| ATI18901.1 | MF766047_p38 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28704 | 29123 |
| ATI18925.1 | MF766047_p62 | hypothetical protein | phrog_4024 | unknown function | unknown function | -1 | 42484 | 42687 |
| ATI18937.1 | MF766047_p74 | hypothetical protein | phrog_12223 | unknown function | unknown function | -1 | 48170 | 48310 |
| ATI18924.1 | MF766047_p61 | hypothetical protein | phrog_19723 | unknown function | unknown function | -1 | 42188 | 42487 |
| ATI18892.1 | MF766047_p29 | hypothetical protein | phrog_4061 | unknown function | unknown function | -1 | 23040 | 23387 |
| ATI18931.1 | MF766047_p68 | hypothetical protein | phrog_14620 | unknown function | unknown function | -1 | 45232 | 45513 |
| ATI18919.1 | MF766047_p56 | hypothetical protein | phrog_22014 | unknown function | unknown function | -1 | 40416 | 40550 |
| ATI18929.1 | MF766047_p66 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 43940 | 44668 |
| ATI18864.1 | MF766047_p1 | hypothetical protein | phrog_4207 | unknown function | unknown function | -1 | 74 | 274 |
| ATI18930.1 | MF766047_p67 | hypothetical protein | phrog_3994 | unknown function | unknown function | -1 | 44768 | 45229 |
| ATI18921.1 | MF766047_p58 | hypothetical protein | phrog_11485 | unknown function | unknown function | -1 | 40849 | 41337 |
| ATI18905.1 | MF766047_p42 | hypothetical protein | phrog_3979 | unknown function | unknown function | 1 | 30360 | 30596 |
| ATI18881.1 | MF766047_p17 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 11033 | 11763 |
| ATI18914.1 | MF766047_p51 | hypothetical protein | phrog_27901 | unknown function | unknown function | 1 | 37064 | 37255 |
| ATI18909.1 | MF766047_p46 | hypothetical protein | phrog_4123 | unknown function | unknown function | 1 | 32512 | 32886 |
| ATI18926.1 | MF766047_p63 | dNMP kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 42692 | 43276 |
| ATI18908.1 | MF766047_p45 | helix-turn-helix DNA binding domain protein | phrog_3512 | sigma factor | transcription regulation | 1 | 32135 | 32515 |
| ATI18923.1 | MF766047_p60 | hypothetical protein | phrog_3965 | unknown function | unknown function | -1 | 41581 | 42081 |
| ATI18873.1 | MF766047_p10 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6741 | 7274 |
| ATI18872.1 | MF766047_p9 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 5614 | 6738 |
| ATI18868.1 | MF766047_p5 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 1726 | 1986 |
| ATI18888.1 | MF766047_p25 | minor tail protein | phrog_988 | tail protein | tail | 1 | 20068 | 21342 |
| ATI18917.1 | MF766047_p54 | hypothetical protein | phrog_9533 | unknown function | unknown function | -1 | 39509 | 39709 |
| ATI18883.1 | MF766047_p20 | minor tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 14973 | 15827 |
| ATI18920.1 | MF766047_p57 | hypothetical protein | phrog_4071 | unknown function | unknown function | -1 | 40543 | 40848 |
| ATI18915.1 | MF766047_p52 | integrase | phrog_95 | integrase | integration and excision | -1 | 37301 | 39307 |
| ATI18890.1 | MF766047_p27 | lysin | phrog_1493 | endolysin | lysis | 1 | 21711 | 22787 |
| ATI18874.1 | MF766047_p11 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 7349 | 8395 |