| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775670 |
Definition |
Lactococcus phage LP9104, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
29157 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
35.15 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE82753.1 | MF775670_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8856 | 10449 |
| ATE82741.1 | MF775670_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 252 | 776 |
| ATE82750.1 | MF775670_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6440 | 6805 |
| ATE82771.1 | MF775670_p31 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20360 | 21022 |
| ATE82744.1 | MF775670_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2686 | 3822 |
| ATE82781.1 | MF775670_p41 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 24306 | 24593 |
| ATE82751.1 | MF775670_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6862 | 8832 |
| ATE82782.1 | MF775670_p42 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 24640 | 24912 |
| ATE82784.1 | MF775670_p44 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25011 | 25907 |
| ATE82743.1 | MF775670_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2389 | 2673 |
| ATE82777.1 | MF775670_p37 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 22951 | 23166 |
| ATE82756.1 | MF775670_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11277 | 14036 |
| ATE82772.1 | MF775670_p32 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21078 | 21320 |
| ATE82752.1 | MF775670_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8856 | 9761 |
| ATE82762.1 | MF775670_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17498 | 18202 |
| ATE82758.1 | MF775670_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14932 | 16059 |
| ATE82779.1 | MF775670_p39 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23542 | 24096 |
| ATE82759.1 | MF775670_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16049 | 16342 |
| ATE82747.1 | MF775670_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5534 | 5797 |
| ATE82786.1 | MF775670_p46 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 26717 | 26836 |
| ATE82745.1 | MF775670_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3803 | 4339 |
| ATE82746.1 | MF775670_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4332 | 5513 |
| ATE82787.1 | MF775670_p47 | hypothetical protein | phrog_6866 | unknown function | unknown function | 1 | 26986 | 27132 |
| ATE82768.1 | MF775670_p28 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19599 | 19853 |
| ATE82766.1 | MF775670_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19263 | 19430 |
| ATE82774.1 | MF775670_p34 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 21614 | 21943 |
| ATE82792.1 | MF775670_p52 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 28323 | 28490 |
| ATE82791.1 | MF775670_p51 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 27844 | 28326 |
| ATE82776.1 | MF775670_p36 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22442 | 22954 |
| ATE82789.1 | MF775670_p49 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 27583 | 27711 |
| ATE82754.1 | MF775670_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10470 | 10745 |
| ATE82788.1 | MF775670_p48 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 27265 | 27453 |
| ATE82769.1 | MF775670_p29 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 19930 | 20235 |
| ATE82765.1 | MF775670_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18916 | 19263 |
| ATE82767.1 | MF775670_p27 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19430 | 19606 |
| ATE82749.1 | MF775670_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6108 | 6449 |
| ATE82764.1 | MF775670_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18477 | 18743 |
| ATE82748.1 | MF775670_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5797 | 6111 |
| ATE82778.1 | MF775670_p38 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23179 | 23538 |
| ATE82763.1 | MF775670_p23 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18254 | 18415 |
| ATE82742.1 | MF775670_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 777 | 2399 |
| ATE82755.1 | MF775670_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10765 | 11277 |
| ATE82761.1 | MF775670_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17148 | 17501 |
| ATE82780.1 | MF775670_p40 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24083 | 24349 |
| ATE82785.1 | MF775670_p45 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 26001 | 26222 |
| ATE82775.1 | MF775670_p35 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 21940 | 22362 |
| ATE82790.1 | MF775670_p50 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 27716 | 27847 |
| ATE82757.1 | MF775670_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14036 | 14932 |
| ATE82773.1 | MF775670_p33 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 21406 | 21579 |
| ATE82770.1 | MF775670_p30 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20235 | 20354 |
| ATE82783.1 | MF775670_p43 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 24896 | 25018 |
| ATE82760.1 | MF775670_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16332 | 17126 |