| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775675 |
Definition |
Lactococcus phage LP9206c, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
29291 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
34.95 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83016.1 | MF775675_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10774 | 11286 |
| ATE83010.1 | MF775675_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6117 | 6458 |
| ATE83026.1 | MF775675_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18916 | 19263 |
| ATE83036.1 | MF775675_p35 | methylase | singleton | unknown function | unknown function | -1 | 21493 | 21882 |
| ATE83020.1 | MF775675_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16049 | 16342 |
| ATE83014.1 | MF775675_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8865 | 10458 |
| ATE83013.1 | MF775675_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8865 | 9770 |
| ATE83012.1 | MF775675_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6871 | 8841 |
| ATE83034.1 | MF775675_p33 | hypothetical protein | phrog_3972 | unknown function | unknown function | -1 | 20929 | 21279 |
| ATE83002.1 | MF775675_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 261 | 785 |
| ATE83003.1 | MF775675_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 786 | 2408 |
| ATE83019.1 | MF775675_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14932 | 16059 |
| ATE83037.1 | MF775675_p36 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22108 | 22533 |
| ATE83035.1 | MF775675_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21341 | 21478 |
| ATE83047.1 | MF775675_p46 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 26183 | 26404 |
| ATE83005.1 | MF775675_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2695 | 3831 |
| ATE83045.1 | MF775675_p44 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25078 | 25200 |
| ATE83042.1 | MF775675_p41 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24265 | 24531 |
| ATE83025.1 | MF775675_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18477 | 18743 |
| ATE83046.1 | MF775675_p45 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25193 | 26089 |
| ATE83052.1 | MF775675_p51 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 27898 | 28029 |
| ATE83049.1 | MF775675_p48 | hypothetical protein | phrog_6866 | unknown function | unknown function | 1 | 27168 | 27314 |
| ATE83029.1 | MF775675_p28 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19608 | 19811 |
| ATE83018.1 | MF775675_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14036 | 14932 |
| ATE83022.1 | MF775675_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17148 | 17501 |
| ATE83024.1 | MF775675_p23 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18254 | 18415 |
| ATE83041.1 | MF775675_p40 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23724 | 24278 |
| ATE83004.1 | MF775675_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2398 | 2682 |
| ATE83017.1 | MF775675_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11286 | 14036 |
| ATE83033.1 | MF775675_p32 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 20609 | 20932 |
| ATE83008.1 | MF775675_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5543 | 5806 |
| ATE83038.1 | MF775675_p37 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22618 | 23136 |
| ATE83021.1 | MF775675_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16332 | 17126 |
| ATE83051.1 | MF775675_p50 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 27765 | 27893 |
| ATE83015.1 | MF775675_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10479 | 10754 |
| ATE83048.1 | MF775675_p47 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 26899 | 27018 |
| ATE83040.1 | MF775675_p39 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23361 | 23720 |
| ATE83032.1 | MF775675_p31 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20479 | 20598 |
| ATE83044.1 | MF775675_p43 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 24822 | 25094 |
| ATE83011.1 | MF775675_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6449 | 6814 |
| ATE83054.1 | MF775675_p53 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 28505 | 28672 |
| ATE83006.1 | MF775675_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3812 | 4348 |
| ATE83043.1 | MF775675_p42 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 24488 | 24775 |
| ATE83007.1 | MF775675_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4341 | 5522 |
| ATE83023.1 | MF775675_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17498 | 18202 |
| ATE83027.1 | MF775675_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19263 | 19430 |
| ATE83050.1 | MF775675_p49 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 27447 | 27635 |
| ATE83009.1 | MF775675_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5806 | 6120 |
| ATE83031.1 | MF775675_p30 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20171 | 20479 |
| ATE83039.1 | MF775675_p38 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23133 | 23348 |
| ATE83030.1 | MF775675_p29 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19841 | 20092 |
| ATE83053.1 | MF775675_p52 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28026 | 28508 |
| ATE83028.1 | MF775675_p27 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19430 | 19606 |