| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775678 |
Definition |
Lactococcus phage LP9404, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30072 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
34.94 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83202.1 | MF775678_p42 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25042 | 25308 |
| ATE83195.1 | MF775678_p35 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 22378 | 22551 |
| ATE83208.1 | MF775678_p48 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27676 | 27795 |
| ATE83176.1 | MF775678_p16 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10770 | 11282 |
| ATE83207.1 | MF775678_p47 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 26960 | 27181 |
| ATE83166.1 | MF775678_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4342 | 5523 |
| ATE83168.1 | MF775678_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5807 | 6121 |
| ATE83170.1 | MF775678_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6450 | 6815 |
| ATE83174.1 | MF775678_p13 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8865 | 10455 |
| ATE83192.1 | MF775678_p32 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20461 | 21123 |
| ATE83196.1 | MF775678_p36 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22586 | 22888 |
| ATE83173.1 | MF775678_p14 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8865 | 9770 |
| ATE83179.1 | MF775678_p19 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14928 | 16055 |
| ATE83194.1 | MF775678_p34 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22044 | 22292 |
| ATE83177.1 | MF775678_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11282 | 14032 |
| ATE83197.1 | MF775678_p37 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22885 | 23310 |
| ATE83205.1 | MF775678_p45 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25855 | 25977 |
| ATE83191.1 | MF775678_p31 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20336 | 20455 |
| ATE83188.1 | MF775678_p28 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19465 | 19668 |
| ATE83187.1 | MF775678_p27 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19287 | 19463 |
| ATE83162.1 | MF775678_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 787 | 2409 |
| ATE83178.1 | MF775678_p18 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14032 | 14928 |
| ATE83211.1 | MF775678_p51 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 28542 | 28670 |
| ATE83200.1 | MF775678_p40 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24138 | 24497 |
| ATE83180.1 | MF775678_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16045 | 16338 |
| ATE83172.1 | MF775678_p12 | neck passage structure | phrog_16048 | virion structural protein | head and packaging | 1 | 8533 | 8841 |
| ATE83214.1 | MF775678_p54 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29282 | 29449 |
| ATE83186.1 | MF775678_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19120 | 19287 |
| ATE83210.1 | MF775678_p50 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28224 | 28412 |
| ATE83185.1 | MF775678_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18773 | 19120 |
| ATE83189.1 | MF775678_p29 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19698 | 19949 |
| ATE83182.1 | MF775678_p22 | holin | phrog_1379 | unknown function | unknown function | 1 | 17144 | 17497 |
| ATE83199.1 | MF775678_p39 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23910 | 24125 |
| ATE83184.1 | MF775678_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18331 | 18600 |
| ATE83175.1 | MF775678_p15 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10475 | 10750 |
| ATE83164.1 | MF775678_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2696 | 3832 |
| ATE83171.1 | MF775678_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6872 | 8485 |
| ATE83190.1 | MF775678_p30 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20028 | 20336 |
| ATE83201.1 | MF775678_p41 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24501 | 25055 |
| ATE83167.1 | MF775678_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5544 | 5807 |
| ATE83169.1 | MF775678_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6118 | 6459 |
| ATE83165.1 | MF775678_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3813 | 4349 |
| ATE83203.1 | MF775678_p43 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25265 | 25552 |
| ATE83206.1 | MF775678_p46 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25970 | 26866 |
| ATE83198.1 | MF775678_p38 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23395 | 23913 |
| ATE83212.1 | MF775678_p52 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28675 | 28806 |
| ATE83209.1 | MF775678_p49 | hypothetical protein | phrog_6866 | unknown function | unknown function | 1 | 27972 | 28091 |
| ATE83163.1 | MF775678_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2399 | 2683 |
| ATE83161.1 | MF775678_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 262 | 786 |
| ATE83183.1 | MF775678_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17494 | 18270 |
| ATE83213.1 | MF775678_p53 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28803 | 29285 |
| ATE83204.1 | MF775678_p44 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25599 | 25871 |
| ATE83193.1 | MF775678_p33 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21179 | 22051 |
| ATE83181.1 | MF775678_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16328 | 17122 |