Genomic map of Lactococcus phage LP9404 (MF775678)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF775678
Definition
Lactococcus phage LP9404, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
NUCCORE
Length
30072
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
54
%GC
34.94
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE83202.1 MF775678_p42 hypothetical protein phrog_1449 unknown function unknown function -1 25042 25308
ATE83195.1 MF775678_p35 hypothetical protein phrog_4582 unknown function unknown function -1 22378 22551
ATE83208.1 MF775678_p48 hypothetical protein phrog_2413 unknown function unknown function -1 27676 27795
ATE83176.1 MF775678_p16 hypothetical protein phrog_1421 virion structural protein head and packaging 1 10770 11282
ATE83207.1 MF775678_p47 hypothetical protein phrog_2541 unknown function unknown function -1 26960 27181
ATE83166.1 MF775678_p6 major capsid protein phrog_1393 minor head protein head and packaging 1 4342 5523
ATE83168.1 MF775678_p8 hypothetical protein phrog_1429 virion structural protein head and packaging 1 5807 6121
ATE83170.1 MF775678_p10 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6450 6815
ATE83174.1 MF775678_p13 major tail protein extension phrog_3791 major tail protein tail 1 8865 10455
ATE83192.1 MF775678_p32 methylase phrog_1071 DNA methyltransferase other -1 20461 21123
ATE83196.1 MF775678_p36 hypothetical protein phrog_1919 unknown function unknown function -1 22586 22888
ATE83173.1 MF775678_p14 major tail protein phrog_1433 major tail protein tail 1 8865 9770
ATE83179.1 MF775678_p19 tail associated lysin phrog_1432 tail associated lysin tail 1 14928 16055
ATE83194.1 MF775678_p34 hypothetical protein phrog_1825 DNA methyltransferase other -1 22044 22292
ATE83177.1 MF775678_p17 tape measure protein phrog_58 tail length tape measure protein tail 1 11282 14032
ATE83197.1 MF775678_p37 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22885 23310
ATE83205.1 MF775678_p45 hypothetical protein phrog_3604 unknown function unknown function -1 25855 25977
ATE83191.1 MF775678_p31 hypothetical protein phrog_1508 unknown function unknown function -1 20336 20455
ATE83188.1 MF775678_p28 hypothetical protein phrog_2530 unknown function unknown function -1 19465 19668
ATE83187.1 MF775678_p27 hypothetical protein phrog_1820 unknown function unknown function -1 19287 19463
ATE83162.1 MF775678_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 787 2409
ATE83178.1 MF775678_p18 distal tail protein phrog_1424 tail protein tail 1 14032 14928
ATE83211.1 MF775678_p51 hypothetical protein phrog_1952 unknown function unknown function 1 28542 28670
ATE83200.1 MF775678_p40 SSB protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 24138 24497
ATE83180.1 MF775678_p20 hypothetical protein phrog_1434 unknown function unknown function 1 16045 16338
ATE83172.1 MF775678_p12 neck passage structure phrog_16048 virion structural protein head and packaging 1 8533 8841
ATE83214.1 MF775678_p54 hypothetical protein phrog_1652 unknown function unknown function 1 29282 29449
ATE83186.1 MF775678_p26 hypothetical protein phrog_1441 unknown function unknown function -1 19120 19287
ATE83210.1 MF775678_p50 hypothetical protein phrog_1656 unknown function unknown function -1 28224 28412
ATE83185.1 MF775678_p25 hypothetical protein phrog_1415 unknown function unknown function -1 18773 19120
ATE83189.1 MF775678_p29 hypothetical protein phrog_1509 unknown function unknown function -1 19698 19949
ATE83182.1 MF775678_p22 holin phrog_1379 unknown function unknown function 1 17144 17497
ATE83199.1 MF775678_p39 hypothetical protein phrog_1295 unknown function unknown function -1 23910 24125
ATE83184.1 MF775678_p24 hypothetical protein phrog_1430 unknown function unknown function -1 18331 18600
ATE83175.1 MF775678_p15 hypothetical protein phrog_1420 virion structural protein head and packaging 1 10475 10750
ATE83164.1 MF775678_p4 portal protein phrog_12 portal protein head and packaging 1 2696 3832
ATE83171.1 MF775678_p11 neck passage structure phrog_2370 neck passage structure connector 1 6872 8485
ATE83190.1 MF775678_p30 hypothetical protein phrog_1225 unknown function unknown function -1 20028 20336
ATE83201.1 MF775678_p41 SAK protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 24501 25055
ATE83167.1 MF775678_p7 hypothetical protein phrog_1428 head-tail connector protein connector 1 5544 5807
ATE83169.1 MF775678_p9 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6118 6459
ATE83165.1 MF775678_p5 protease phrog_80 head maturation protease head and packaging 1 3813 4349
ATE83203.1 MF775678_p43 hypothetical protein phrog_1632 unknown function unknown function -1 25265 25552
ATE83206.1 MF775678_p46 hypothetical protein phrog_1284 unknown function unknown function -1 25970 26866
ATE83198.1 MF775678_p38 hypothetical protein phrog_1317 unknown function unknown function -1 23395 23913
ATE83212.1 MF775678_p52 hypothetical protein phrog_1436 unknown function unknown function 1 28675 28806
ATE83209.1 MF775678_p49 hypothetical protein phrog_6866 unknown function unknown function 1 27972 28091
ATE83163.1 MF775678_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2399 2683
ATE83161.1 MF775678_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 262 786
ATE83183.1 MF775678_p23 lysin phrog_670 endolysin lysis 1 17494 18270
ATE83213.1 MF775678_p53 holiday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28803 29285
ATE83204.1 MF775678_p44 hypothetical protein phrog_1405 unknown function unknown function -1 25599 25871
ATE83193.1 MF775678_p33 methylase phrog_56 DNA methyltransferase other -1 21179 22051
ATE83181.1 MF775678_p21 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16328 17122