| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775679 |
Definition |
Lactococcus phage LP9405a, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30083 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
34.97 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83224.1 | MF775679_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6460 | 6825 |
| ATE83239.1 | MF775679_p25 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19131 | 19298 |
| ATE83240.1 | MF775679_p26 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19298 | 19474 |
| ATE83246.1 | MF775679_p32 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21190 | 22062 |
| ATE83223.1 | MF775679_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6128 | 6469 |
| ATE83256.1 | MF775679_p42 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25276 | 25563 |
| ATE83238.1 | MF775679_p24 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18784 | 19131 |
| ATE83250.1 | MF775679_p36 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22896 | 23333 |
| ATE83227.1 | MF775679_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8876 | 10466 |
| ATE83249.1 | MF775679_p35 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22597 | 22899 |
| ATE83243.1 | MF775679_p29 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20039 | 20347 |
| ATE83241.1 | MF775679_p27 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19476 | 19679 |
| ATE83259.1 | MF775679_p45 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25981 | 26877 |
| ATE83266.1 | MF775679_p52 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28814 | 29296 |
| ATE83242.1 | MF775679_p28 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19709 | 19960 |
| ATE83253.1 | MF775679_p39 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24149 | 24508 |
| ATE83220.1 | MF775679_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4352 | 5533 |
| ATE83267.1 | MF775679_p53 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29293 | 29460 |
| ATE83236.1 | MF775679_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17505 | 18281 |
| ATE83229.1 | MF775679_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10781 | 11293 |
| ATE83216.1 | MF775679_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 797 | 2419 |
| ATE83219.1 | MF775679_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3823 | 4359 |
| ATE83263.1 | MF775679_p49 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28235 | 28423 |
| ATE83234.1 | MF775679_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16339 | 17133 |
| ATE83260.1 | MF775679_p46 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 26971 | 27192 |
| ATE83254.1 | MF775679_p40 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24512 | 25066 |
| ATE83230.1 | MF775679_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11293 | 14043 |
| ATE83264.1 | MF775679_p50 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 28553 | 28681 |
| ATE83231.1 | MF775679_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14043 | 14939 |
| ATE83261.1 | MF775679_p47 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27687 | 27806 |
| ATE83232.1 | MF775679_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14939 | 16066 |
| ATE83252.1 | MF775679_p38 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23921 | 24136 |
| ATE83258.1 | MF775679_p44 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25866 | 25988 |
| ATE83235.1 | MF775679_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17155 | 17508 |
| ATE83228.1 | MF775679_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10486 | 10761 |
| ATE83247.1 | MF775679_p33 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22055 | 22303 |
| ATE83218.1 | MF775679_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2706 | 3842 |
| ATE83215.1 | MF775679_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 272 | 796 |
| ATE83217.1 | MF775679_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2409 | 2693 |
| ATE83226.1 | MF775679_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8876 | 9781 |
| ATE83262.1 | MF775679_p48 | hypothetical protein | phrog_6866 | unknown function | unknown function | 1 | 27983 | 28102 |
| ATE83255.1 | MF775679_p41 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25053 | 25319 |
| ATE83225.1 | MF775679_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6882 | 8852 |
| ATE83248.1 | MF775679_p34 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 22389 | 22562 |
| ATE83222.1 | MF775679_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5817 | 6131 |
| ATE83257.1 | MF775679_p43 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25610 | 25882 |
| ATE83251.1 | MF775679_p37 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23406 | 23924 |
| ATE83233.1 | MF775679_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16056 | 16349 |
| ATE83244.1 | MF775679_p30 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20347 | 20466 |
| ATE83237.1 | MF775679_p23 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18342 | 18611 |
| ATE83245.1 | MF775679_p31 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20472 | 21134 |
| ATE83221.1 | MF775679_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5554 | 5817 |
| ATE83265.1 | MF775679_p51 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28686 | 28817 |