| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775680 |
Definition |
Lactococcus phage LP9405b, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
29294 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
34.92 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83275.1 | MF775680_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5807 | 6121 |
| ATE83283.1 | MF775680_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11283 | 14033 |
| ATE83312.1 | MF775680_p45 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 26182 | 26403 |
| ATE83293.1 | MF775680_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19260 | 19427 |
| ATE83279.1 | MF775680_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8866 | 9771 |
| ATE83297.1 | MF775680_p30 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20157 | 20465 |
| ATE83270.1 | MF775680_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2399 | 2683 |
| ATE83273.1 | MF775680_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4342 | 5523 |
| ATE83282.1 | MF775680_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10771 | 11283 |
| ATE83276.1 | MF775680_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6118 | 6459 |
| ATE83317.1 | MF775680_p50 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 27897 | 28028 |
| ATE83272.1 | MF775680_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3813 | 4349 |
| ATE83290.1 | MF775680_p23 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18251 | 18412 |
| ATE83286.1 | MF775680_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16046 | 16339 |
| ATE83319.1 | MF775680_p52 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 28504 | 28671 |
| ATE83313.1 | MF775680_p46 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 26898 | 27017 |
| ATE83268.1 | MF775680_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 262 | 786 |
| ATE83294.1 | MF775680_p27 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19427 | 19603 |
| ATE83271.1 | MF775680_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2696 | 3832 |
| ATE83292.1 | MF775680_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18913 | 19260 |
| ATE83291.1 | MF775680_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18474 | 18740 |
| ATE83281.1 | MF775680_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10476 | 10751 |
| ATE83315.1 | MF775680_p48 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 27446 | 27634 |
| ATE83287.1 | MF775680_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16329 | 17123 |
| ATE83318.1 | MF775680_p51 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28025 | 28507 |
| ATE83298.1 | MF775680_p31 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20465 | 20584 |
| ATE83303.1 | MF775680_p36 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22241 | 22753 |
| ATE83301.1 | MF775680_p34 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 21636 | 21809 |
| ATE83302.1 | MF775680_p35 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 21844 | 22158 |
| ATE83274.1 | MF775680_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5544 | 5807 |
| ATE83300.1 | MF775680_p33 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21308 | 21550 |
| ATE83316.1 | MF775680_p49 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 27764 | 27892 |
| ATE83310.1 | MF775680_p43 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 24942 | 25199 |
| ATE83284.1 | MF775680_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14033 | 14929 |
| ATE83288.1 | MF775680_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17145 | 17498 |
| ATE83269.1 | MF775680_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 787 | 2409 |
| ATE83285.1 | MF775680_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14929 | 16056 |
| ATE83289.1 | MF775680_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17495 | 18199 |
| ATE83280.1 | MF775680_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8866 | 10456 |
| ATE83299.1 | MF775680_p32 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20590 | 21252 |
| ATE83307.1 | MF775680_p40 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23892 | 24392 |
| ATE83314.1 | MF775680_p47 | hypothetical protein | phrog_6866 | unknown function | unknown function | 1 | 27194 | 27313 |
| ATE83278.1 | MF775680_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6872 | 8842 |
| ATE83306.1 | MF775680_p39 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23341 | 23895 |
| ATE83308.1 | MF775680_p41 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24379 | 24645 |
| ATE83304.1 | MF775680_p37 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 22750 | 22965 |
| ATE83295.1 | MF775680_p28 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19596 | 19832 |
| ATE83296.1 | MF775680_p29 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 19894 | 20082 |
| ATE83277.1 | MF775680_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6450 | 6815 |
| ATE83305.1 | MF775680_p38 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 22978 | 23337 |
| ATE83309.1 | MF775680_p42 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 24599 | 24889 |
| ATE83311.1 | MF775680_p44 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25192 | 26088 |