functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
MF775682 |
Definition |
Lactococcus phage LP9609, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30945 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
34.76 |
Number of singletons |
0 |
Number of paralogs |
2 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
ATE83415.1 | MF775682_p42 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25188 | 25478 |
ATE83388.1 | MF775682_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10771 | 11283 |
ATE83420.1 | MF775682_p47 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 27404 | 27625 |
ATE83386.1 | MF775682_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8866 | 10456 |
ATE83395.1 | MF775682_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17495 | 18199 |
ATE83416.1 | MF775682_p43 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25525 | 25797 |
ATE83424.1 | MF775682_p51 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 29067 | 29255 |
ATE83406.1 | MF775682_p33 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21976 | 22224 |
ATE83389.1 | MF775682_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11283 | 14033 |
ATE83390.1 | MF775682_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14033 | 14929 |
ATE83412.1 | MF775682_p39 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24064 | 24423 |
ATE83384.1 | MF775682_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6872 | 8842 |
ATE83409.1 | MF775682_p36 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22817 | 23242 |
ATE83383.1 | MF775682_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6456 | 6815 |
ATE83414.1 | MF775682_p41 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24950 | 25234 |
ATE83403.1 | MF775682_p30 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20232 | 20351 |
ATE83379.1 | MF775682_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4342 | 5523 |
ATE83375.1 | MF775682_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 787 | 2409 |
ATE83401.1 | MF775682_p28 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19596 | 19850 |
ATE83405.1 | MF775682_p32 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21075 | 21983 |
ATE83404.1 | MF775682_p31 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20357 | 21019 |
ATE83418.1 | MF775682_p45 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25896 | 26843 |
ATE83425.1 | MF775682_p52 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 29385 | 29513 |
ATE83411.1 | MF775682_p38 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23836 | 24051 |
ATE83380.1 | MF775682_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5544 | 5807 |
ATE83381.1 | MF775682_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5807 | 6121 |
ATE83382.1 | MF775682_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6118 | 6459 |
ATE83408.1 | MF775682_p35 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22518 | 22820 |
ATE83417.1 | MF775682_p44 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25781 | 25903 |
ATE83394.1 | MF775682_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17145 | 17498 |
ATE83396.1 | MF775682_p23 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18251 | 18412 |
ATE83398.1 | MF775682_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18913 | 19260 |
ATE83376.1 | MF775682_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2399 | 2683 |
ATE83428.1 | MF775682_p55 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 30125 | 30292 |
ATE83397.1 | MF775682_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18474 | 18740 |
ATE83378.1 | MF775682_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3813 | 4349 |
ATE83391.1 | MF775682_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14929 | 16056 |
ATE83374.1 | MF775682_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 262 | 786 |
ATE83377.1 | MF775682_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2696 | 3832 |
ATE83423.1 | MF775682_p50 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28654 | 29070 |
ATE83413.1 | MF775682_p40 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24427 | 24981 |
ATE83387.1 | MF775682_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10476 | 10751 |
ATE83426.1 | MF775682_p53 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 29518 | 29649 |
ATE83421.1 | MF775682_p48 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 28121 | 28240 |
ATE83422.1 | MF775682_p49 | hypothetical protein | phrog_6866 | unknown function | unknown function | 1 | 28417 | 28536 |
ATE83400.1 | MF775682_p27 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19427 | 19603 |
ATE83402.1 | MF775682_p29 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 19924 | 20232 |
ATE83392.1 | MF775682_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16046 | 16339 |
ATE83393.1 | MF775682_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16329 | 17123 |
ATE83407.1 | MF775682_p34 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 22310 | 22483 |
ATE83427.1 | MF775682_p54 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29646 | 30128 |
ATE83410.1 | MF775682_p37 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23327 | 23839 |
ATE83399.1 | MF775682_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19260 | 19427 |
ATE83419.1 | MF775682_p46 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26830 | 27267 |
ATE83385.1 | MF775682_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8866 | 9771 |