| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775686 |
Definition |
Lactococcus phage LP9908, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
29668 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
34.82 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83624.1 | MF775686_p33 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21065 | 21307 |
| ATE83619.1 | MF775686_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19417 | 19593 |
| ATE83623.1 | MF775686_p32 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20347 | 21009 |
| ATE83631.1 | MF775686_p40 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23509 | 24063 |
| ATE83635.1 | MF775686_p44 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25104 | 25367 |
| ATE83640.1 | MF775686_p49 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 27793 | 27981 |
| ATE83641.1 | MF775686_p50 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 28012 | 28239 |
| ATE83638.1 | MF775686_p47 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 26504 | 26725 |
| ATE83599.1 | MF775686_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5797 | 6111 |
| ATE83610.1 | MF775686_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16036 | 16329 |
| ATE83601.1 | MF775686_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6440 | 6805 |
| ATE83629.1 | MF775686_p38 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 22919 | 23134 |
| ATE83633.1 | MF775686_p42 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24547 | 24813 |
| ATE83602.1 | MF775686_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6862 | 8832 |
| ATE83606.1 | MF775686_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10761 | 11273 |
| ATE83605.1 | MF775686_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10466 | 10741 |
| ATE83597.1 | MF775686_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4332 | 5513 |
| ATE83632.1 | MF775686_p41 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24060 | 24560 |
| ATE83621.1 | MF775686_p30 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 19914 | 20222 |
| ATE83642.1 | MF775686_p51 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28244 | 28375 |
| ATE83630.1 | MF775686_p39 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23147 | 23506 |
| ATE83596.1 | MF775686_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3803 | 4339 |
| ATE83628.1 | MF775686_p37 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22410 | 22922 |
| ATE83612.1 | MF775686_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17135 | 17488 |
| ATE83634.1 | MF775686_p43 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 24767 | 25057 |
| ATE83617.1 | MF775686_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18903 | 19250 |
| ATE83625.1 | MF775686_p34 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 21393 | 21566 |
| ATE83620.1 | MF775686_p29 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19586 | 19840 |
| ATE83603.1 | MF775686_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8856 | 9761 |
| ATE83613.1 | MF775686_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17485 | 18189 |
| ATE83611.1 | MF775686_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16319 | 17113 |
| ATE83627.1 | MF775686_p36 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 21900 | 22337 |
| ATE83592.1 | MF775686_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 252 | 776 |
| ATE83618.1 | MF775686_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19250 | 19417 |
| ATE83604.1 | MF775686_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8856 | 10446 |
| ATE83644.1 | MF775686_p53 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 28851 | 29018 |
| ATE83595.1 | MF775686_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2686 | 3822 |
| ATE83616.1 | MF775686_p25 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 18727 | 18906 |
| ATE83622.1 | MF775686_p31 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20222 | 20341 |
| ATE83608.1 | MF775686_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14023 | 14919 |
| ATE83594.1 | MF775686_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2389 | 2673 |
| ATE83607.1 | MF775686_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11273 | 14023 |
| ATE83636.1 | MF775686_p45 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25339 | 25521 |
| ATE83626.1 | MF775686_p35 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 21601 | 21903 |
| ATE83593.1 | MF775686_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 777 | 2399 |
| ATE83643.1 | MF775686_p52 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28372 | 28854 |
| ATE83600.1 | MF775686_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6108 | 6449 |
| ATE83598.1 | MF775686_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5534 | 5797 |
| ATE83615.1 | MF775686_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18464 | 18730 |
| ATE83639.1 | MF775686_p48 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27221 | 27340 |
| ATE83609.1 | MF775686_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14919 | 16046 |
| ATE83637.1 | MF775686_p46 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25514 | 26410 |
| ATE83614.1 | MF775686_p23 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18241 | 18402 |