| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775687 |
Definition |
Lactococcus phage LP0004a, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30093 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
34.81 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE82658.1 | MF775687_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18923 | 19189 |
| ATE82673.1 | MF775687_p40 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23606 | 23965 |
| ATE82640.1 | MF775687_p7 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4791 | 5972 |
| ATE82685.1 | MF775687_p52 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 28435 | 28662 |
| ATE82668.1 | MF775687_p35 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 21852 | 22025 |
| ATE82638.1 | MF775687_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3145 | 4281 |
| ATE82663.1 | MF775687_p30 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 20045 | 20299 |
| ATE82676.1 | MF775687_p43 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25002 | 25268 |
| ATE82637.1 | MF775687_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2848 | 3132 |
| ATE82657.1 | MF775687_p24 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18700 | 18861 |
| ATE82653.1 | MF775687_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16495 | 16788 |
| ATE82688.1 | MF775687_p55 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29274 | 29441 |
| ATE82682.1 | MF775687_p49 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27691 | 27810 |
| ATE82650.1 | MF775687_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11732 | 14482 |
| ATE82681.1 | MF775687_p48 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 26974 | 27195 |
| ATE82665.1 | MF775687_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20681 | 20800 |
| ATE82677.1 | MF775687_p44 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25222 | 25512 |
| ATE82651.1 | MF775687_p18 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14482 | 15378 |
| ATE82643.1 | MF775687_p10 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6567 | 6908 |
| ATE82648.1 | MF775687_p15 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10925 | 11200 |
| ATE82687.1 | MF775687_p54 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28795 | 29277 |
| ATE82639.1 | MF775687_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4262 | 4798 |
| ATE82679.1 | MF775687_p46 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25815 | 25937 |
| ATE82661.1 | MF775687_p28 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19709 | 19876 |
| ATE82659.1 | MF775687_p26 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 19186 | 19365 |
| ATE82672.1 | MF775687_p39 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23378 | 23593 |
| ATE82642.1 | MF775687_p9 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6256 | 6570 |
| ATE82645.1 | MF775687_p12 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 7321 | 9291 |
| ATE82680.1 | MF775687_p47 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25930 | 26880 |
| ATE82675.1 | MF775687_p42 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24509 | 25015 |
| ATE82646.1 | MF775687_p14 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 9315 | 10220 |
| ATE82647.1 | MF775687_p13 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 9315 | 10905 |
| ATE82684.1 | MF775687_p51 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28216 | 28404 |
| ATE82667.1 | MF775687_p34 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21524 | 21766 |
| ATE82678.1 | MF775687_p45 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25565 | 25831 |
| ATE82670.1 | MF775687_p37 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22359 | 22796 |
| ATE82666.1 | MF775687_p33 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20806 | 21468 |
| ATE82635.1 | MF775687_p2 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 773 | 1234 |
| ATE82660.1 | MF775687_p27 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19362 | 19709 |
| ATE82636.1 | MF775687_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1236 | 2858 |
| ATE82664.1 | MF775687_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20373 | 20681 |
| ATE82644.1 | MF775687_p11 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6899 | 7264 |
| ATE82655.1 | MF775687_p22 | holin | phrog_1379 | unknown function | unknown function | 1 | 17594 | 17947 |
| ATE82649.1 | MF775687_p16 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 11220 | 11732 |
| ATE82686.1 | MF775687_p53 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28667 | 28798 |
| ATE82634.1 | MF775687_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 252 | 776 |
| ATE82641.1 | MF775687_p8 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5993 | 6256 |
| ATE82662.1 | MF775687_p29 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19876 | 20052 |
| ATE82683.1 | MF775687_p50 | hypothetical protein | phrog_15117 | unknown function | unknown function | -1 | 27827 | 27955 |
| ATE82656.1 | MF775687_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17944 | 18648 |
| ATE82652.1 | MF775687_p19 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 15378 | 16505 |
| ATE82674.1 | MF775687_p41 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23968 | 24522 |
| ATE82669.1 | MF775687_p36 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22060 | 22362 |
| ATE82654.1 | MF775687_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16778 | 17572 |
| ATE82671.1 | MF775687_p38 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22869 | 23381 |