Genomic map of Lactococcus phage LP0004a (MF775687)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF775687
Definition
Lactococcus phage LP0004a, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
NUCCORE
Length
30093
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
34.81
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE82658.1 MF775687_p25 hypothetical protein phrog_1430 unknown function unknown function -1 18923 19189
ATE82673.1 MF775687_p40 SSB protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 23606 23965
ATE82640.1 MF775687_p7 major capsid protein phrog_1393 minor head protein head and packaging 1 4791 5972
ATE82685.1 MF775687_p52 hypothetical protein phrog_5027 unknown function unknown function 1 28435 28662
ATE82668.1 MF775687_p35 hypothetical protein phrog_4582 unknown function unknown function -1 21852 22025
ATE82638.1 MF775687_p5 portal protein phrog_12 portal protein head and packaging 1 3145 4281
ATE82663.1 MF775687_p30 hypothetical protein phrog_1509 unknown function unknown function -1 20045 20299
ATE82676.1 MF775687_p43 hypothetical protein phrog_1449 unknown function unknown function -1 25002 25268
ATE82637.1 MF775687_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2848 3132
ATE82657.1 MF775687_p24 lytic transglycosylase phrog_3775 transglycosylase other -1 18700 18861
ATE82653.1 MF775687_p20 hypothetical protein phrog_1434 unknown function unknown function 1 16495 16788
ATE82688.1 MF775687_p55 hypothetical protein phrog_1652 unknown function unknown function 1 29274 29441
ATE82682.1 MF775687_p49 hypothetical protein phrog_2413 unknown function unknown function -1 27691 27810
ATE82650.1 MF775687_p17 tape measure protein phrog_58 tail length tape measure protein tail 1 11732 14482
ATE82681.1 MF775687_p48 hypothetical protein phrog_2541 unknown function unknown function -1 26974 27195
ATE82665.1 MF775687_p32 hypothetical protein phrog_1508 unknown function unknown function -1 20681 20800
ATE82677.1 MF775687_p44 hypothetical protein phrog_1632 unknown function unknown function -1 25222 25512
ATE82651.1 MF775687_p18 distal tail protein phrog_1424 tail protein tail 1 14482 15378
ATE82643.1 MF775687_p10 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6567 6908
ATE82648.1 MF775687_p15 hypothetical protein phrog_1420 virion structural protein head and packaging 1 10925 11200
ATE82687.1 MF775687_p54 holiday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28795 29277
ATE82639.1 MF775687_p6 protease phrog_80 head maturation protease head and packaging 1 4262 4798
ATE82679.1 MF775687_p46 hypothetical protein phrog_3604 unknown function unknown function -1 25815 25937
ATE82661.1 MF775687_p28 hypothetical protein phrog_1441 unknown function unknown function -1 19709 19876
ATE82659.1 MF775687_p26 hypothetical protein phrog_3389 unknown function unknown function -1 19186 19365
ATE82672.1 MF775687_p39 hypothetical protein phrog_1295 unknown function unknown function -1 23378 23593
ATE82642.1 MF775687_p9 hypothetical protein phrog_1429 virion structural protein head and packaging 1 6256 6570
ATE82645.1 MF775687_p12 neck passage structure phrog_2370 neck passage structure connector 1 7321 9291
ATE82680.1 MF775687_p47 hypothetical protein phrog_1284 unknown function unknown function -1 25930 26880
ATE82675.1 MF775687_p42 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 24509 25015
ATE82646.1 MF775687_p14 major tail protein phrog_1433 major tail protein tail 1 9315 10220
ATE82647.1 MF775687_p13 major tail protein extension phrog_3791 major tail protein tail 1 9315 10905
ATE82684.1 MF775687_p51 hypothetical protein phrog_1656 unknown function unknown function -1 28216 28404
ATE82667.1 MF775687_p34 hypothetical protein phrog_1825 DNA methyltransferase other -1 21524 21766
ATE82678.1 MF775687_p45 hypothetical protein phrog_1405 unknown function unknown function -1 25565 25831
ATE82670.1 MF775687_p37 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22359 22796
ATE82666.1 MF775687_p33 methylase phrog_1071 DNA methyltransferase other -1 20806 21468
ATE82635.1 MF775687_p2 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 773 1234
ATE82660.1 MF775687_p27 hypothetical protein phrog_1415 unknown function unknown function -1 19362 19709
ATE82636.1 MF775687_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1236 2858
ATE82664.1 MF775687_p31 hypothetical protein phrog_1225 unknown function unknown function -1 20373 20681
ATE82644.1 MF775687_p11 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6899 7264
ATE82655.1 MF775687_p22 holin phrog_1379 unknown function unknown function 1 17594 17947
ATE82649.1 MF775687_p16 hypothetical protein phrog_1421 virion structural protein head and packaging 1 11220 11732
ATE82686.1 MF775687_p53 hypothetical protein phrog_1436 unknown function unknown function 1 28667 28798
ATE82634.1 MF775687_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 252 776
ATE82641.1 MF775687_p8 hypothetical protein phrog_1428 head-tail connector protein connector 1 5993 6256
ATE82662.1 MF775687_p29 hypothetical protein phrog_1820 unknown function unknown function -1 19876 20052
ATE82683.1 MF775687_p50 hypothetical protein phrog_15117 unknown function unknown function -1 27827 27955
ATE82656.1 MF775687_p23 lysin phrog_670 endolysin lysis 1 17944 18648
ATE82652.1 MF775687_p19 tail associated lysin phrog_1432 tail associated lysin tail 1 15378 16505
ATE82674.1 MF775687_p41 SAK protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 23968 24522
ATE82669.1 MF775687_p36 hypothetical protein phrog_1919 unknown function unknown function -1 22060 22362
ATE82654.1 MF775687_p21 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16778 17572
ATE82671.1 MF775687_p38 hypothetical protein phrog_1317 unknown function unknown function -1 22869 23381