| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775688 |
Definition |
Lactococcus phage LP0004b, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30953 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
34.73 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83648.1 | MF775688_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2848 | 3132 |
| ATE83688.1 | MF775688_p44 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25861 | 26127 |
| ATE83694.1 | MF775688_p50 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 28550 | 28711 |
| ATE83675.1 | MF775688_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20334 | 20642 |
| ATE83660.1 | MF775688_p16 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 11220 | 11732 |
| ATE83662.1 | MF775688_p18 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14482 | 15378 |
| ATE83686.1 | MF775688_p42 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24827 | 25381 |
| ATE83666.1 | MF775688_p22 | holin | phrog_1379 | unknown function | unknown function | 1 | 17594 | 17947 |
| ATE83676.1 | MF775688_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20642 | 20761 |
| ATE83699.1 | MF775688_p55 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29655 | 30137 |
| ATE83685.1 | MF775688_p41 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24465 | 24824 |
| ATE83696.1 | MF775688_p52 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 29076 | 29264 |
| ATE83663.1 | MF775688_p19 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 15378 | 16505 |
| ATE83664.1 | MF775688_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16495 | 16788 |
| ATE83678.1 | MF775688_p34 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21485 | 22384 |
| ATE83674.1 | MF775688_p30 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20066 | 20314 |
| ATE83653.1 | MF775688_p9 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6256 | 6570 |
| ATE83656.1 | MF775688_p12 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 7321 | 9291 |
| ATE83682.1 | MF775688_p38 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23218 | 23643 |
| ATE83645.1 | MF775688_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 252 | 776 |
| ATE83689.1 | MF775688_p45 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26081 | 26371 |
| ATE83661.1 | MF775688_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11732 | 14482 |
| ATE83683.1 | MF775688_p39 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23728 | 24240 |
| ATE83684.1 | MF775688_p40 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24237 | 24452 |
| ATE83651.1 | MF775688_p7 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4791 | 5972 |
| ATE83695.1 | MF775688_p51 | hypothetical protein | phrog_15117 | unknown function | unknown function | -1 | 28687 | 28815 |
| ATE83681.1 | MF775688_p37 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22919 | 23221 |
| ATE83671.1 | MF775688_p27 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19362 | 19709 |
| ATE83672.1 | MF775688_p28 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19709 | 19876 |
| ATE83650.1 | MF775688_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4262 | 4798 |
| ATE83691.1 | MF775688_p47 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 26674 | 26796 |
| ATE83669.1 | MF775688_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18923 | 19189 |
| ATE83679.1 | MF775688_p35 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22377 | 22625 |
| ATE83667.1 | MF775688_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17944 | 18648 |
| ATE83655.1 | MF775688_p11 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6899 | 7264 |
| ATE83649.1 | MF775688_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3145 | 4281 |
| ATE83692.1 | MF775688_p48 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 26789 | 27739 |
| ATE83665.1 | MF775688_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16778 | 17572 |
| ATE83658.1 | MF775688_p13 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 9315 | 10905 |
| ATE83654.1 | MF775688_p10 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6567 | 6908 |
| ATE83652.1 | MF775688_p8 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5993 | 6256 |
| ATE83673.1 | MF775688_p29 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19876 | 20064 |
| ATE83646.1 | MF775688_p2 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 773 | 1234 |
| ATE83670.1 | MF775688_p26 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 19186 | 19365 |
| ATE83687.1 | MF775688_p43 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25368 | 25874 |
| ATE83668.1 | MF775688_p24 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18700 | 18861 |
| ATE83698.1 | MF775688_p54 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 29527 | 29658 |
| ATE83647.1 | MF775688_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1236 | 2858 |
| ATE83693.1 | MF775688_p49 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 27833 | 28054 |
| ATE83659.1 | MF775688_p15 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10925 | 11200 |
| ATE83680.1 | MF775688_p36 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 22711 | 22884 |
| ATE83677.1 | MF775688_p33 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20767 | 21429 |
| ATE83657.1 | MF775688_p14 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 9315 | 10220 |
| ATE83697.1 | MF775688_p53 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 29295 | 29522 |
| ATE83700.1 | MF775688_p56 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 30134 | 30301 |
| ATE83690.1 | MF775688_p46 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 26424 | 26690 |