Genomic map of Lactococcus phage LP0004b (MF775688)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF775688
Definition
Lactococcus phage LP0004b, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
NUCCORE
Length
30953
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
34.73
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE83648.1 MF775688_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2848 3132
ATE83688.1 MF775688_p44 hypothetical protein phrog_1449 unknown function unknown function -1 25861 26127
ATE83694.1 MF775688_p50 hypothetical protein phrog_2413 unknown function unknown function -1 28550 28711
ATE83675.1 MF775688_p31 hypothetical protein phrog_1225 unknown function unknown function -1 20334 20642
ATE83660.1 MF775688_p16 hypothetical protein phrog_1421 virion structural protein head and packaging 1 11220 11732
ATE83662.1 MF775688_p18 distal tail protein phrog_1424 tail protein tail 1 14482 15378
ATE83686.1 MF775688_p42 SAK protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 24827 25381
ATE83666.1 MF775688_p22 holin phrog_1379 unknown function unknown function 1 17594 17947
ATE83676.1 MF775688_p32 hypothetical protein phrog_1508 unknown function unknown function -1 20642 20761
ATE83699.1 MF775688_p55 holiday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 29655 30137
ATE83685.1 MF775688_p41 SSB protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 24465 24824
ATE83696.1 MF775688_p52 hypothetical protein phrog_1656 unknown function unknown function -1 29076 29264
ATE83663.1 MF775688_p19 tail associated lysin phrog_1432 tail associated lysin tail 1 15378 16505
ATE83664.1 MF775688_p20 hypothetical protein phrog_1434 unknown function unknown function 1 16495 16788
ATE83678.1 MF775688_p34 methylase phrog_56 DNA methyltransferase other -1 21485 22384
ATE83674.1 MF775688_p30 hypothetical protein phrog_2530 unknown function unknown function -1 20066 20314
ATE83653.1 MF775688_p9 hypothetical protein phrog_1429 virion structural protein head and packaging 1 6256 6570
ATE83656.1 MF775688_p12 neck passage structure phrog_2370 neck passage structure connector 1 7321 9291
ATE83682.1 MF775688_p38 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 23218 23643
ATE83645.1 MF775688_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 252 776
ATE83689.1 MF775688_p45 hypothetical protein phrog_1632 unknown function unknown function -1 26081 26371
ATE83661.1 MF775688_p17 tape measure protein phrog_58 tail length tape measure protein tail 1 11732 14482
ATE83683.1 MF775688_p39 hypothetical protein phrog_1317 unknown function unknown function -1 23728 24240
ATE83684.1 MF775688_p40 hypothetical protein phrog_1295 unknown function unknown function -1 24237 24452
ATE83651.1 MF775688_p7 major capsid protein phrog_1393 minor head protein head and packaging 1 4791 5972
ATE83695.1 MF775688_p51 hypothetical protein phrog_15117 unknown function unknown function -1 28687 28815
ATE83681.1 MF775688_p37 hypothetical protein phrog_1919 unknown function unknown function -1 22919 23221
ATE83671.1 MF775688_p27 hypothetical protein phrog_1415 unknown function unknown function -1 19362 19709
ATE83672.1 MF775688_p28 hypothetical protein phrog_1441 unknown function unknown function -1 19709 19876
ATE83650.1 MF775688_p6 protease phrog_80 head maturation protease head and packaging 1 4262 4798
ATE83691.1 MF775688_p47 hypothetical protein phrog_3604 unknown function unknown function -1 26674 26796
ATE83669.1 MF775688_p25 hypothetical protein phrog_1430 unknown function unknown function -1 18923 19189
ATE83679.1 MF775688_p35 hypothetical protein phrog_1825 DNA methyltransferase other -1 22377 22625
ATE83667.1 MF775688_p23 lysin phrog_670 endolysin lysis 1 17944 18648
ATE83655.1 MF775688_p11 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6899 7264
ATE83649.1 MF775688_p5 portal protein phrog_12 portal protein head and packaging 1 3145 4281
ATE83692.1 MF775688_p48 hypothetical protein phrog_1284 unknown function unknown function -1 26789 27739
ATE83665.1 MF775688_p21 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16778 17572
ATE83658.1 MF775688_p13 major tail protein extension phrog_3791 major tail protein tail 1 9315 10905
ATE83654.1 MF775688_p10 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6567 6908
ATE83652.1 MF775688_p8 hypothetical protein phrog_1428 head-tail connector protein connector 1 5993 6256
ATE83673.1 MF775688_p29 hypothetical protein phrog_1820 unknown function unknown function -1 19876 20064
ATE83646.1 MF775688_p2 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 773 1234
ATE83670.1 MF775688_p26 hypothetical protein phrog_3389 unknown function unknown function -1 19186 19365
ATE83687.1 MF775688_p43 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 25368 25874
ATE83668.1 MF775688_p24 lytic transglycosylase phrog_3775 transglycosylase other -1 18700 18861
ATE83698.1 MF775688_p54 hypothetical protein phrog_1436 unknown function unknown function 1 29527 29658
ATE83647.1 MF775688_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1236 2858
ATE83693.1 MF775688_p49 hypothetical protein phrog_2541 unknown function unknown function -1 27833 28054
ATE83659.1 MF775688_p15 hypothetical protein phrog_1420 virion structural protein head and packaging 1 10925 11200
ATE83680.1 MF775688_p36 hypothetical protein phrog_4582 unknown function unknown function -1 22711 22884
ATE83677.1 MF775688_p33 methylase phrog_1071 DNA methyltransferase other -1 20767 21429
ATE83657.1 MF775688_p14 major tail protein phrog_1433 major tail protein tail 1 9315 10220
ATE83697.1 MF775688_p53 hypothetical protein phrog_5027 unknown function unknown function 1 29295 29522
ATE83700.1 MF775688_p56 hypothetical protein phrog_1652 unknown function unknown function 1 30134 30301
ATE83690.1 MF775688_p46 hypothetical protein phrog_1405 unknown function unknown function -1 26424 26690