| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775689 |
Definition |
Lactococcus phage LP0004c, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30044 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
34.79 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83748.1 | MF775689_p48 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 26923 | 27144 |
| ATE83739.1 | MF775689_p39 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23327 | 23542 |
| ATE83723.1 | MF775689_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17944 | 18648 |
| ATE83709.1 | MF775689_p9 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6256 | 6570 |
| ATE83713.1 | MF775689_p14 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 9315 | 10220 |
| ATE83708.1 | MF775689_p8 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5993 | 6256 |
| ATE83731.1 | MF775689_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20322 | 20630 |
| ATE83738.1 | MF775689_p38 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22818 | 23330 |
| ATE83745.1 | MF775689_p45 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25514 | 25780 |
| ATE83722.1 | MF775689_p22 | holin | phrog_1379 | unknown function | unknown function | 1 | 17594 | 17947 |
| ATE83710.1 | MF775689_p10 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6567 | 6908 |
| ATE83720.1 | MF775689_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16495 | 16788 |
| ATE83705.1 | MF775689_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3145 | 4281 |
| ATE83715.1 | MF775689_p15 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10925 | 11200 |
| ATE83707.1 | MF775689_p7 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4791 | 5972 |
| ATE83721.1 | MF775689_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16778 | 17572 |
| ATE83725.1 | MF775689_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18923 | 19189 |
| ATE83718.1 | MF775689_p18 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14482 | 15378 |
| ATE83702.1 | MF775689_p2 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 773 | 1234 |
| ATE83704.1 | MF775689_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2848 | 3132 |
| ATE83751.1 | MF775689_p51 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28167 | 28355 |
| ATE83717.1 | MF775689_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11732 | 14482 |
| ATE83737.1 | MF775689_p37 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22308 | 22733 |
| ATE83735.1 | MF775689_p35 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 21801 | 21974 |
| ATE83742.1 | MF775689_p42 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24458 | 24964 |
| ATE83755.1 | MF775689_p55 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29225 | 29392 |
| ATE83752.1 | MF775689_p52 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 28386 | 28613 |
| ATE83732.1 | MF775689_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20630 | 20749 |
| ATE83746.1 | MF775689_p46 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25764 | 25886 |
| ATE83716.1 | MF775689_p16 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 11220 | 11732 |
| ATE83753.1 | MF775689_p53 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28618 | 28749 |
| ATE83726.1 | MF775689_p26 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 19186 | 19365 |
| ATE83703.1 | MF775689_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1236 | 2858 |
| ATE83734.1 | MF775689_p34 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21473 | 21715 |
| ATE83701.1 | MF775689_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 252 | 776 |
| ATE83727.1 | MF775689_p27 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19362 | 19709 |
| ATE83743.1 | MF775689_p43 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24951 | 25217 |
| ATE83719.1 | MF775689_p19 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 15378 | 16505 |
| ATE83724.1 | MF775689_p24 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18700 | 18861 |
| ATE83747.1 | MF775689_p47 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25879 | 26829 |
| ATE83754.1 | MF775689_p54 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28746 | 29228 |
| ATE83740.1 | MF775689_p40 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23555 | 23914 |
| ATE83750.1 | MF775689_p50 | hypothetical protein | phrog_15117 | unknown function | unknown function | -1 | 27777 | 27905 |
| ATE83729.1 | MF775689_p29 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19876 | 20052 |
| ATE83733.1 | MF775689_p33 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20755 | 21417 |
| ATE83736.1 | MF775689_p36 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22009 | 22311 |
| ATE83749.1 | MF775689_p49 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27640 | 27801 |
| ATE83730.1 | MF775689_p30 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20054 | 20245 |
| ATE83712.1 | MF775689_p12 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 7321 | 9291 |
| ATE83706.1 | MF775689_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4262 | 4798 |
| ATE83741.1 | MF775689_p41 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23917 | 24471 |
| ATE83728.1 | MF775689_p28 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19709 | 19876 |
| ATE83744.1 | MF775689_p44 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25171 | 25461 |
| ATE83711.1 | MF775689_p11 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6899 | 7264 |
| ATE83714.1 | MF775689_p13 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 9315 | 10905 |