Genomic map of Lactococcus phage LP0004c (MF775689)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF775689
Definition
Lactococcus phage LP0004c, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
NUCCORE
Length
30044
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
34.79
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE83748.1 MF775689_p48 hypothetical protein phrog_2541 unknown function unknown function -1 26923 27144
ATE83739.1 MF775689_p39 hypothetical protein phrog_1295 unknown function unknown function -1 23327 23542
ATE83723.1 MF775689_p23 lysin phrog_670 endolysin lysis 1 17944 18648
ATE83709.1 MF775689_p9 hypothetical protein phrog_1429 virion structural protein head and packaging 1 6256 6570
ATE83713.1 MF775689_p14 major tail protein phrog_1433 major tail protein tail 1 9315 10220
ATE83708.1 MF775689_p8 hypothetical protein phrog_1428 head-tail connector protein connector 1 5993 6256
ATE83731.1 MF775689_p31 hypothetical protein phrog_1225 unknown function unknown function -1 20322 20630
ATE83738.1 MF775689_p38 hypothetical protein phrog_1317 unknown function unknown function -1 22818 23330
ATE83745.1 MF775689_p45 hypothetical protein phrog_1405 unknown function unknown function -1 25514 25780
ATE83722.1 MF775689_p22 holin phrog_1379 unknown function unknown function 1 17594 17947
ATE83710.1 MF775689_p10 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6567 6908
ATE83720.1 MF775689_p20 hypothetical protein phrog_1434 unknown function unknown function 1 16495 16788
ATE83705.1 MF775689_p5 portal protein phrog_12 portal protein head and packaging 1 3145 4281
ATE83715.1 MF775689_p15 hypothetical protein phrog_1420 virion structural protein head and packaging 1 10925 11200
ATE83707.1 MF775689_p7 major capsid protein phrog_1393 minor head protein head and packaging 1 4791 5972
ATE83721.1 MF775689_p21 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16778 17572
ATE83725.1 MF775689_p25 hypothetical protein phrog_1430 unknown function unknown function -1 18923 19189
ATE83718.1 MF775689_p18 distal tail protein phrog_1424 tail protein tail 1 14482 15378
ATE83702.1 MF775689_p2 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 773 1234
ATE83704.1 MF775689_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2848 3132
ATE83751.1 MF775689_p51 hypothetical protein phrog_1656 unknown function unknown function -1 28167 28355
ATE83717.1 MF775689_p17 tape measure protein phrog_58 tail length tape measure protein tail 1 11732 14482
ATE83737.1 MF775689_p37 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22308 22733
ATE83735.1 MF775689_p35 hypothetical protein phrog_4582 unknown function unknown function -1 21801 21974
ATE83742.1 MF775689_p42 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 24458 24964
ATE83755.1 MF775689_p55 hypothetical protein phrog_1652 unknown function unknown function 1 29225 29392
ATE83752.1 MF775689_p52 hypothetical protein phrog_5027 unknown function unknown function 1 28386 28613
ATE83732.1 MF775689_p32 hypothetical protein phrog_1508 unknown function unknown function -1 20630 20749
ATE83746.1 MF775689_p46 hypothetical protein phrog_3604 unknown function unknown function -1 25764 25886
ATE83716.1 MF775689_p16 hypothetical protein phrog_1421 virion structural protein head and packaging 1 11220 11732
ATE83753.1 MF775689_p53 hypothetical protein phrog_1436 unknown function unknown function 1 28618 28749
ATE83726.1 MF775689_p26 hypothetical protein phrog_3389 unknown function unknown function -1 19186 19365
ATE83703.1 MF775689_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1236 2858
ATE83734.1 MF775689_p34 hypothetical protein phrog_1825 DNA methyltransferase other -1 21473 21715
ATE83701.1 MF775689_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 252 776
ATE83727.1 MF775689_p27 hypothetical protein phrog_1415 unknown function unknown function -1 19362 19709
ATE83743.1 MF775689_p43 hypothetical protein phrog_1449 unknown function unknown function -1 24951 25217
ATE83719.1 MF775689_p19 tail associated lysin phrog_1432 tail associated lysin tail 1 15378 16505
ATE83724.1 MF775689_p24 lytic transglycosylase phrog_3775 transglycosylase other -1 18700 18861
ATE83747.1 MF775689_p47 hypothetical protein phrog_1284 unknown function unknown function -1 25879 26829
ATE83754.1 MF775689_p54 holiday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28746 29228
ATE83740.1 MF775689_p40 SSB protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 23555 23914
ATE83750.1 MF775689_p50 hypothetical protein phrog_15117 unknown function unknown function -1 27777 27905
ATE83729.1 MF775689_p29 hypothetical protein phrog_1820 unknown function unknown function -1 19876 20052
ATE83733.1 MF775689_p33 methylase phrog_1071 DNA methyltransferase other -1 20755 21417
ATE83736.1 MF775689_p36 hypothetical protein phrog_1919 unknown function unknown function -1 22009 22311
ATE83749.1 MF775689_p49 hypothetical protein phrog_2413 unknown function unknown function -1 27640 27801
ATE83730.1 MF775689_p30 hypothetical protein phrog_2530 unknown function unknown function -1 20054 20245
ATE83712.1 MF775689_p12 neck passage structure phrog_2370 neck passage structure connector 1 7321 9291
ATE83706.1 MF775689_p6 protease phrog_80 head maturation protease head and packaging 1 4262 4798
ATE83741.1 MF775689_p41 SAK protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 23917 24471
ATE83728.1 MF775689_p28 hypothetical protein phrog_1441 unknown function unknown function -1 19709 19876
ATE83744.1 MF775689_p44 hypothetical protein phrog_1632 unknown function unknown function -1 25171 25461
ATE83711.1 MF775689_p11 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6899 7264
ATE83714.1 MF775689_p13 major tail protein extension phrog_3791 major tail protein tail 1 9315 10905