Genomic map of Lactococcus phage LP0004d (MF775690)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF775690
Definition
Lactococcus phage LP0004d, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
NUCCORE
Length
30104
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
34.81
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE83801.1 MF775690_p46 hypothetical protein phrog_3604 unknown function unknown function -1 25825 25947
ATE83802.1 MF775690_p47 hypothetical protein phrog_1284 unknown function unknown function -1 25940 26890
ATE83770.1 MF775690_p15 hypothetical protein phrog_1420 virion structural protein head and packaging 1 10935 11210
ATE83789.1 MF775690_p34 hypothetical protein phrog_1825 DNA methyltransferase other -1 21534 21776
ATE83784.1 MF775690_p29 hypothetical protein phrog_1820 unknown function unknown function -1 19886 20062
ATE83787.1 MF775690_p32 hypothetical protein phrog_1508 unknown function unknown function -1 20691 20810
ATE83758.1 MF775690_p3 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1246 2868
ATE83798.1 MF775690_p43 hypothetical protein phrog_1449 unknown function unknown function -1 25012 25278
ATE83760.1 MF775690_p5 portal protein phrog_12 portal protein head and packaging 1 3155 4291
ATE83803.1 MF775690_p48 hypothetical protein phrog_2541 unknown function unknown function -1 26984 27205
ATE83775.1 MF775690_p20 hypothetical protein phrog_1434 unknown function unknown function 1 16505 16798
ATE83791.1 MF775690_p36 hypothetical protein phrog_1919 unknown function unknown function -1 22070 22372
ATE83794.1 MF775690_p39 hypothetical protein phrog_1295 unknown function unknown function -1 23388 23603
ATE83773.1 MF775690_p18 distal tail protein phrog_1424 tail protein tail 1 14492 15388
ATE83785.1 MF775690_p30 hypothetical protein phrog_1509 unknown function unknown function -1 20055 20309
ATE83778.1 MF775690_p23 lysin phrog_670 endolysin lysis 1 17954 18658
ATE83795.1 MF775690_p40 SSB protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 23616 23975
ATE83777.1 MF775690_p22 holin phrog_1379 unknown function unknown function 1 17604 17957
ATE83810.1 MF775690_p55 hypothetical protein phrog_1652 unknown function unknown function 1 29285 29452
ATE83765.1 MF775690_p10 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6577 6918
ATE83767.1 MF775690_p12 neck passage structure phrog_2370 neck passage structure connector 1 7331 9301
ATE83796.1 MF775690_p41 SAK protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 23978 24532
ATE83780.1 MF775690_p25 hypothetical protein phrog_1430 unknown function unknown function -1 18933 19199
ATE83808.1 MF775690_p53 hypothetical protein phrog_1436 unknown function unknown function 1 28678 28809
ATE83769.1 MF775690_p13 major tail protein extension phrog_3791 major tail protein tail 1 9325 10915
ATE83788.1 MF775690_p33 methylase phrog_1071 DNA methyltransferase other -1 20816 21478
ATE83807.1 MF775690_p52 hypothetical protein phrog_5027 unknown function unknown function 1 28446 28673
ATE83782.1 MF775690_p27 hypothetical protein phrog_1415 unknown function unknown function -1 19372 19719
ATE83805.1 MF775690_p50 hypothetical protein phrog_15117 unknown function unknown function -1 27838 27966
ATE83797.1 MF775690_p42 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 24519 25025
ATE83776.1 MF775690_p21 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16788 17582
ATE83804.1 MF775690_p49 hypothetical protein phrog_2413 unknown function unknown function -1 27701 27820
ATE83761.1 MF775690_p6 protease phrog_80 head maturation protease head and packaging 1 4272 4808
ATE83772.1 MF775690_p17 tape measure protein phrog_58 tail length tape measure protein tail 1 11742 14492
ATE83764.1 MF775690_p9 hypothetical protein phrog_1429 virion structural protein head and packaging 1 6266 6580
ATE83757.1 MF775690_p2 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 783 1244
ATE83762.1 MF775690_p7 major capsid protein phrog_1393 minor head protein head and packaging 1 4801 5982
ATE83781.1 MF775690_p26 hypothetical protein phrog_3389 unknown function unknown function -1 19196 19375
ATE83768.1 MF775690_p14 major tail protein phrog_1433 major tail protein tail 1 9325 10230
ATE83786.1 MF775690_p31 hypothetical protein phrog_1225 unknown function unknown function -1 20383 20691
ATE83779.1 MF775690_p24 lytic transglycosylase phrog_3775 transglycosylase other -1 18710 18871
ATE83809.1 MF775690_p54 holiday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28806 29288
ATE83790.1 MF775690_p35 hypothetical protein phrog_4582 unknown function unknown function -1 21862 22035
ATE83799.1 MF775690_p44 hypothetical protein phrog_1632 unknown function unknown function -1 25232 25522
ATE83763.1 MF775690_p8 hypothetical protein phrog_1428 head-tail connector protein connector 1 6003 6266
ATE83806.1 MF775690_p51 hypothetical protein phrog_1656 unknown function unknown function -1 28227 28415
ATE83766.1 MF775690_p11 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6909 7274
ATE83774.1 MF775690_p19 tail associated lysin phrog_1432 tail associated lysin tail 1 15388 16515
ATE83783.1 MF775690_p28 hypothetical protein phrog_1441 unknown function unknown function -1 19719 19886
ATE83793.1 MF775690_p38 hypothetical protein phrog_1317 unknown function unknown function -1 22879 23391
ATE83759.1 MF775690_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2858 3142
ATE83800.1 MF775690_p45 hypothetical protein phrog_1405 unknown function unknown function -1 25575 25841
ATE83771.1 MF775690_p16 hypothetical protein phrog_1421 virion structural protein head and packaging 1 11230 11742
ATE83792.1 MF775690_p37 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22369 22806
ATE83756.1 MF775690_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 262 786