| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775690 |
Definition |
Lactococcus phage LP0004d, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30104 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
34.81 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83801.1 | MF775690_p46 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25825 | 25947 |
| ATE83802.1 | MF775690_p47 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25940 | 26890 |
| ATE83770.1 | MF775690_p15 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10935 | 11210 |
| ATE83789.1 | MF775690_p34 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21534 | 21776 |
| ATE83784.1 | MF775690_p29 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19886 | 20062 |
| ATE83787.1 | MF775690_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20691 | 20810 |
| ATE83758.1 | MF775690_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1246 | 2868 |
| ATE83798.1 | MF775690_p43 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25012 | 25278 |
| ATE83760.1 | MF775690_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3155 | 4291 |
| ATE83803.1 | MF775690_p48 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 26984 | 27205 |
| ATE83775.1 | MF775690_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16505 | 16798 |
| ATE83791.1 | MF775690_p36 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22070 | 22372 |
| ATE83794.1 | MF775690_p39 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23388 | 23603 |
| ATE83773.1 | MF775690_p18 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14492 | 15388 |
| ATE83785.1 | MF775690_p30 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 20055 | 20309 |
| ATE83778.1 | MF775690_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17954 | 18658 |
| ATE83795.1 | MF775690_p40 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23616 | 23975 |
| ATE83777.1 | MF775690_p22 | holin | phrog_1379 | unknown function | unknown function | 1 | 17604 | 17957 |
| ATE83810.1 | MF775690_p55 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29285 | 29452 |
| ATE83765.1 | MF775690_p10 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6577 | 6918 |
| ATE83767.1 | MF775690_p12 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 7331 | 9301 |
| ATE83796.1 | MF775690_p41 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23978 | 24532 |
| ATE83780.1 | MF775690_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18933 | 19199 |
| ATE83808.1 | MF775690_p53 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28678 | 28809 |
| ATE83769.1 | MF775690_p13 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 9325 | 10915 |
| ATE83788.1 | MF775690_p33 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20816 | 21478 |
| ATE83807.1 | MF775690_p52 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 28446 | 28673 |
| ATE83782.1 | MF775690_p27 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19372 | 19719 |
| ATE83805.1 | MF775690_p50 | hypothetical protein | phrog_15117 | unknown function | unknown function | -1 | 27838 | 27966 |
| ATE83797.1 | MF775690_p42 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24519 | 25025 |
| ATE83776.1 | MF775690_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16788 | 17582 |
| ATE83804.1 | MF775690_p49 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27701 | 27820 |
| ATE83761.1 | MF775690_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4272 | 4808 |
| ATE83772.1 | MF775690_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11742 | 14492 |
| ATE83764.1 | MF775690_p9 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6266 | 6580 |
| ATE83757.1 | MF775690_p2 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 783 | 1244 |
| ATE83762.1 | MF775690_p7 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4801 | 5982 |
| ATE83781.1 | MF775690_p26 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 19196 | 19375 |
| ATE83768.1 | MF775690_p14 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 9325 | 10230 |
| ATE83786.1 | MF775690_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20383 | 20691 |
| ATE83779.1 | MF775690_p24 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18710 | 18871 |
| ATE83809.1 | MF775690_p54 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28806 | 29288 |
| ATE83790.1 | MF775690_p35 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 21862 | 22035 |
| ATE83799.1 | MF775690_p44 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25232 | 25522 |
| ATE83763.1 | MF775690_p8 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 6003 | 6266 |
| ATE83806.1 | MF775690_p51 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28227 | 28415 |
| ATE83766.1 | MF775690_p11 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6909 | 7274 |
| ATE83774.1 | MF775690_p19 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 15388 | 16515 |
| ATE83783.1 | MF775690_p28 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19719 | 19886 |
| ATE83793.1 | MF775690_p38 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22879 | 23391 |
| ATE83759.1 | MF775690_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2858 | 3142 |
| ATE83800.1 | MF775690_p45 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25575 | 25841 |
| ATE83771.1 | MF775690_p16 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 11230 | 11742 |
| ATE83792.1 | MF775690_p37 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22369 | 22806 |
| ATE83756.1 | MF775690_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 262 | 786 |