| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775691 |
Definition |
Lactococcus phage LP0109, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30537 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
34.82 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83851.1 | MF775691_p41 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24373 | 24996 |
| ATE83830.1 | MF775691_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16329 | 17123 |
| ATE83818.1 | MF775691_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5807 | 6121 |
| ATE83847.1 | MF775691_p37 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22760 | 23185 |
| ATE83832.1 | MF775691_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17495 | 18199 |
| ATE83817.1 | MF775691_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5544 | 5807 |
| ATE83821.1 | MF775691_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6872 | 8842 |
| ATE83848.1 | MF775691_p38 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23270 | 23782 |
| ATE83850.1 | MF775691_p40 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24010 | 24369 |
| ATE83856.1 | MF775691_p46 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25911 | 26858 |
| ATE83828.1 | MF775691_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14929 | 16056 |
| ATE83813.1 | MF775691_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2399 | 2683 |
| ATE83816.1 | MF775691_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4342 | 5523 |
| ATE83862.1 | MF775691_p52 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 29116 | 29247 |
| ATE83849.1 | MF775691_p39 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23779 | 23994 |
| ATE83861.1 | MF775691_p51 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 28884 | 29111 |
| ATE83819.1 | MF775691_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6118 | 6459 |
| ATE83845.1 | MF775691_p35 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 22253 | 22426 |
| ATE83827.1 | MF775691_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14033 | 14929 |
| ATE83857.1 | MF775691_p47 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26845 | 27282 |
| ATE83811.1 | MF775691_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 262 | 786 |
| ATE83842.1 | MF775691_p32 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20318 | 20980 |
| ATE83837.1 | MF775691_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19260 | 19427 |
| ATE83843.1 | MF775691_p33 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21036 | 21926 |
| ATE83860.1 | MF775691_p50 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28665 | 28853 |
| ATE83815.1 | MF775691_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3813 | 4349 |
| ATE83853.1 | MF775691_p43 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25203 | 25493 |
| ATE83846.1 | MF775691_p36 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22461 | 22763 |
| ATE83825.1 | MF775691_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10771 | 11283 |
| ATE83863.1 | MF775691_p53 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29244 | 29726 |
| ATE83814.1 | MF775691_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2696 | 3832 |
| ATE83855.1 | MF775691_p45 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25796 | 25918 |
| ATE83824.1 | MF775691_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10476 | 10751 |
| ATE83831.1 | MF775691_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17145 | 17498 |
| ATE83833.1 | MF775691_p23 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18251 | 18412 |
| ATE83852.1 | MF775691_p42 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24983 | 25249 |
| ATE83820.1 | MF775691_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6450 | 6815 |
| ATE83858.1 | MF775691_p48 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 27419 | 27640 |
| ATE83835.1 | MF775691_p25 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 18737 | 18916 |
| ATE83829.1 | MF775691_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16046 | 16339 |
| ATE83834.1 | MF775691_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18474 | 18740 |
| ATE83823.1 | MF775691_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8866 | 10456 |
| ATE83864.1 | MF775691_p54 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29723 | 29890 |
| ATE83839.1 | MF775691_p29 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 19617 | 19865 |
| ATE83836.1 | MF775691_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18913 | 19260 |
| ATE83822.1 | MF775691_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8866 | 9771 |
| ATE83838.1 | MF775691_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19427 | 19615 |
| ATE83859.1 | MF775691_p49 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 28135 | 28254 |
| ATE83826.1 | MF775691_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11283 | 14033 |
| ATE83841.1 | MF775691_p31 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20193 | 20312 |
| ATE83854.1 | MF775691_p44 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25546 | 25812 |
| ATE83844.1 | MF775691_p34 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21919 | 22167 |
| ATE83840.1 | MF775691_p30 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 19885 | 20193 |
| ATE83812.1 | MF775691_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 787 | 2409 |