| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775692 |
Definition |
Lactococcus phage LP0202, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30236 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
34.93 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83916.1 | MF775692_p52 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28813 | 28944 |
| ATE83867.1 | MF775692_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2389 | 2673 |
| ATE83887.1 | MF775692_p23 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18241 | 18402 |
| ATE83883.1 | MF775692_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16036 | 16329 |
| ATE83869.1 | MF775692_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3803 | 4339 |
| ATE83904.1 | MF775692_p40 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24059 | 24274 |
| ATE83885.1 | MF775692_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17135 | 17488 |
| ATE83882.1 | MF775692_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14919 | 16046 |
| ATE83876.1 | MF775692_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8856 | 9761 |
| ATE83890.1 | MF775692_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18903 | 19250 |
| ATE83900.1 | MF775692_p36 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 22533 | 22706 |
| ATE83902.1 | MF775692_p38 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23040 | 23477 |
| ATE83881.1 | MF775692_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14023 | 14919 |
| ATE83889.1 | MF775692_p25 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 18727 | 18906 |
| ATE83891.1 | MF775692_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19250 | 19417 |
| ATE83906.1 | MF775692_p42 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24653 | 25276 |
| ATE83917.1 | MF775692_p53 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28941 | 29423 |
| ATE83884.1 | MF775692_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16319 | 17113 |
| ATE83915.1 | MF775692_p51 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 28581 | 28808 |
| ATE83903.1 | MF775692_p39 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23550 | 24062 |
| ATE83905.1 | MF775692_p41 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24290 | 24649 |
| ATE83918.1 | MF775692_p54 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29420 | 29587 |
| ATE83898.1 | MF775692_p34 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21298 | 22206 |
| ATE83911.1 | MF775692_p47 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 27120 | 27341 |
| ATE83896.1 | MF775692_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20455 | 20574 |
| ATE83901.1 | MF775692_p37 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22741 | 23043 |
| ATE83909.1 | MF775692_p45 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25826 | 26083 |
| ATE83873.1 | MF775692_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6108 | 6449 |
| ATE83907.1 | MF775692_p43 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25263 | 25529 |
| ATE83879.1 | MF775692_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10761 | 11273 |
| ATE83899.1 | MF775692_p35 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22199 | 22447 |
| ATE83886.1 | MF775692_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17485 | 18189 |
| ATE83877.1 | MF775692_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8856 | 10446 |
| ATE83913.1 | MF775692_p49 | hypothetical protein | phrog_15117 | unknown function | unknown function | -1 | 27973 | 28101 |
| ATE83868.1 | MF775692_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2686 | 3822 |
| ATE83914.1 | MF775692_p50 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28362 | 28550 |
| ATE83912.1 | MF775692_p48 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27827 | 27997 |
| ATE83871.1 | MF775692_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5534 | 5797 |
| ATE83880.1 | MF775692_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11273 | 14023 |
| ATE83897.1 | MF775692_p33 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20580 | 21242 |
| ATE83910.1 | MF775692_p46 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 26076 | 27026 |
| ATE83874.1 | MF775692_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6440 | 6805 |
| ATE83878.1 | MF775692_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10466 | 10741 |
| ATE83872.1 | MF775692_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5797 | 6111 |
| ATE83888.1 | MF775692_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18464 | 18730 |
| ATE83893.1 | MF775692_p29 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19586 | 19822 |
| ATE83908.1 | MF775692_p44 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25483 | 25773 |
| ATE83865.1 | MF775692_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 252 | 776 |
| ATE83894.1 | MF775692_p30 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 19884 | 20072 |
| ATE83892.1 | MF775692_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19417 | 19593 |
| ATE83895.1 | MF775692_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20147 | 20455 |
| ATE83866.1 | MF775692_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 777 | 2399 |
| ATE83875.1 | MF775692_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6862 | 8832 |
| ATE83870.1 | MF775692_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4332 | 5513 |