| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775693 |
Definition |
Lactococcus phage LP0209, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30339 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
34.76 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83927.1 | MF775693_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6108 | 6449 |
| ATE83936.1 | MF775693_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14919 | 16046 |
| ATE83939.1 | MF775693_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17135 | 17488 |
| ATE83962.1 | MF775693_p44 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25498 | 25788 |
| ATE83951.1 | MF775693_p33 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20592 | 21254 |
| ATE83953.1 | MF775693_p35 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22211 | 22459 |
| ATE83950.1 | MF775693_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20467 | 20586 |
| ATE83948.1 | MF775693_p30 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 19896 | 20084 |
| ATE83932.1 | MF775693_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10466 | 10741 |
| ATE83971.1 | MF775693_p53 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29523 | 29690 |
| ATE83938.1 | MF775693_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16319 | 17113 |
| ATE83930.1 | MF775693_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8856 | 9761 |
| ATE83947.1 | MF775693_p29 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19598 | 19834 |
| ATE83935.1 | MF775693_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14023 | 14919 |
| ATE83949.1 | MF775693_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20159 | 20467 |
| ATE83958.1 | MF775693_p40 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23878 | 24237 |
| ATE83926.1 | MF775693_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5797 | 6111 |
| ATE83954.1 | MF775693_p36 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 22545 | 22718 |
| ATE83933.1 | MF775693_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10761 | 11273 |
| ATE83959.1 | MF775693_p41 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24241 | 24795 |
| ATE83929.1 | MF775693_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6862 | 8832 |
| ATE83961.1 | MF775693_p43 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25278 | 25544 |
| ATE83924.1 | MF775693_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4332 | 5513 |
| ATE83921.1 | MF775693_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2389 | 2673 |
| ATE83963.1 | MF775693_p45 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25841 | 26098 |
| ATE83967.1 | MF775693_p49 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28152 | 28643 |
| ATE83928.1 | MF775693_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6440 | 6805 |
| ATE83966.1 | MF775693_p48 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27796 | 27915 |
| ATE83965.1 | MF775693_p47 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 27081 | 27302 |
| ATE83942.1 | MF775693_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18464 | 18730 |
| ATE83920.1 | MF775693_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 777 | 2399 |
| ATE83957.1 | MF775693_p39 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23647 | 23862 |
| ATE83934.1 | MF775693_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11273 | 14023 |
| ATE83931.1 | MF775693_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8856 | 10446 |
| ATE83970.1 | MF775693_p52 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29044 | 29526 |
| ATE83946.1 | MF775693_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19417 | 19605 |
| ATE83964.1 | MF775693_p46 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 26091 | 26987 |
| ATE83952.1 | MF775693_p34 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21310 | 22218 |
| ATE83922.1 | MF775693_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2686 | 3822 |
| ATE83941.1 | MF775693_p23 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18241 | 18402 |
| ATE83919.1 | MF775693_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 252 | 776 |
| ATE83945.1 | MF775693_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19250 | 19417 |
| ATE83937.1 | MF775693_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16036 | 16329 |
| ATE83940.1 | MF775693_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17485 | 18189 |
| ATE83923.1 | MF775693_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3803 | 4339 |
| ATE83960.1 | MF775693_p42 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 24782 | 25291 |
| ATE83925.1 | MF775693_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5534 | 5797 |
| ATE83956.1 | MF775693_p38 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23138 | 23650 |
| ATE83968.1 | MF775693_p50 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 28783 | 28911 |
| ATE83944.1 | MF775693_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18903 | 19250 |
| ATE83943.1 | MF775693_p25 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 18727 | 18906 |
| ATE83969.1 | MF775693_p51 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28916 | 29047 |
| ATE83955.1 | MF775693_p37 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22753 | 23055 |