| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775694 |
Definition |
Lactococcus phage LP0212, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
29916 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
34.76 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE83979.1 | MF775694_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5797 | 6111 |
| ATE83991.1 | MF775694_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16319 | 17113 |
| ATE83980.1 | MF775694_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6108 | 6449 |
| ATE84016.1 | MF775694_p45 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25664 | 26560 |
| ATE84001.1 | MF775694_p30 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 19896 | 20084 |
| ATE83993.1 | MF775694_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17485 | 18189 |
| ATE84007.1 | MF775694_p36 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 22545 | 22718 |
| ATE84011.1 | MF775694_p40 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23878 | 24237 |
| ATE84023.1 | MF775694_p52 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29096 | 29263 |
| ATE83976.1 | MF775694_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3803 | 4339 |
| ATE84000.1 | MF775694_p29 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19598 | 19834 |
| ATE84017.1 | MF775694_p46 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 26654 | 26875 |
| ATE83984.1 | MF775694_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8856 | 10446 |
| ATE83988.1 | MF775694_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14023 | 14919 |
| ATE84010.1 | MF775694_p39 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23647 | 23862 |
| ATE83997.1 | MF775694_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18903 | 19250 |
| ATE83975.1 | MF775694_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2686 | 3822 |
| ATE83985.1 | MF775694_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10466 | 10741 |
| ATE84018.1 | MF775694_p47 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27369 | 27488 |
| ATE83992.1 | MF775694_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17135 | 17488 |
| ATE83998.1 | MF775694_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19250 | 19417 |
| ATE84009.1 | MF775694_p38 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23138 | 23650 |
| ATE84002.1 | MF775694_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20159 | 20467 |
| ATE84005.1 | MF775694_p34 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21310 | 22218 |
| ATE83981.1 | MF775694_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6440 | 6805 |
| ATE84019.1 | MF775694_p48 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 27725 | 28216 |
| ATE83996.1 | MF775694_p25 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 18727 | 18906 |
| ATE83995.1 | MF775694_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18464 | 18730 |
| ATE84003.1 | MF775694_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20467 | 20586 |
| ATE84013.1 | MF775694_p42 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24851 | 25117 |
| ATE83987.1 | MF775694_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11273 | 14023 |
| ATE83974.1 | MF775694_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2389 | 2673 |
| ATE83986.1 | MF775694_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10761 | 11273 |
| ATE84022.1 | MF775694_p51 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28617 | 29099 |
| ATE83972.1 | MF775694_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 252 | 776 |
| ATE84008.1 | MF775694_p37 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22753 | 23055 |
| ATE84020.1 | MF775694_p49 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 28356 | 28484 |
| ATE83977.1 | MF775694_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4332 | 5513 |
| ATE83994.1 | MF775694_p23 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18241 | 18402 |
| ATE84012.1 | MF775694_p41 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24241 | 24864 |
| ATE84006.1 | MF775694_p35 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22211 | 22459 |
| ATE83983.1 | MF775694_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8856 | 9761 |
| ATE83989.1 | MF775694_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14919 | 16046 |
| ATE84021.1 | MF775694_p50 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28489 | 28620 |
| ATE84015.1 | MF775694_p44 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25414 | 25671 |
| ATE83990.1 | MF775694_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16036 | 16329 |
| ATE83973.1 | MF775694_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 777 | 2399 |
| ATE84004.1 | MF775694_p33 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20592 | 21254 |
| ATE84014.1 | MF775694_p43 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25071 | 25361 |
| ATE83978.1 | MF775694_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5534 | 5797 |
| ATE83999.1 | MF775694_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19417 | 19605 |
| ATE83982.1 | MF775694_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6862 | 8832 |