| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775702 |
Definition |
Lactococcus phage LP1407, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30508 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
34.9 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE84413.1 | MF775702_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5514 | 5777 |
| ATE84454.1 | MF775702_p48 | repressor protein/antirepressor | phrog_2977 | anti-repressor | transcription regulation | -1 | 27176 | 27340 |
| ATE84460.1 | MF775702_p54 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29214 | 29696 |
| ATE84412.1 | MF775702_p6 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4312 | 5493 |
| ATE84461.1 | MF775702_p55 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29693 | 29860 |
| ATE84416.1 | MF775702_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6420 | 6785 |
| ATE84428.1 | MF775702_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 17465 | 18169 |
| ATE84425.1 | MF775702_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16016 | 16309 |
| ATE84424.1 | MF775702_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 14899 | 16026 |
| ATE84420.1 | MF775702_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10446 | 10721 |
| ATE84445.1 | MF775702_p39 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23627 | 23842 |
| ATE84436.1 | MF775702_p30 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 19876 | 20064 |
| ATE84437.1 | MF775702_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20139 | 20447 |
| ATE84446.1 | MF775702_p40 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23858 | 24217 |
| ATE84458.1 | MF775702_p52 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 28953 | 29081 |
| ATE84448.1 | MF775702_p42 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24831 | 25097 |
| ATE84431.1 | MF775702_p25 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 18707 | 18886 |
| ATE84459.1 | MF775702_p53 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 29086 | 29217 |
| ATE84415.1 | MF775702_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6088 | 6429 |
| ATE84456.1 | MF775702_p50 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 28152 | 28280 |
| ATE84435.1 | MF775702_p29 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 19578 | 19814 |
| ATE84432.1 | MF775702_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18883 | 19230 |
| ATE84427.1 | MF775702_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17115 | 17468 |
| ATE84447.1 | MF775702_p41 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24221 | 24844 |
| ATE84409.1 | MF775702_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2369 | 2653 |
| ATE84444.1 | MF775702_p38 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23118 | 23630 |
| ATE84419.1 | MF775702_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 8836 | 10426 |
| ATE84441.1 | MF775702_p35 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22191 | 22439 |
| ATE84407.1 | MF775702_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 232 | 756 |
| ATE84443.1 | MF775702_p37 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22733 | 23035 |
| ATE84417.1 | MF775702_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6842 | 8812 |
| ATE84438.1 | MF775702_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 20447 | 20566 |
| ATE84449.1 | MF775702_p43 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25051 | 25341 |
| ATE84453.1 | MF775702_p47 | repressor protein/antirepressor | singleton | unknown function | unknown function | -1 | 26879 | 27019 |
| ATE84442.1 | MF775702_p36 | hypothetical protein | phrog_4582 | unknown function | unknown function | -1 | 22525 | 22698 |
| ATE84450.1 | MF775702_p44 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25394 | 25651 |
| ATE84421.1 | MF775702_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10741 | 11253 |
| ATE84410.1 | MF775702_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2666 | 3802 |
| ATE84430.1 | MF775702_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 18444 | 18710 |
| ATE84457.1 | MF775702_p51 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28634 | 28822 |
| ATE84434.1 | MF775702_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 19397 | 19585 |
| ATE84408.1 | MF775702_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 757 | 2379 |
| ATE84418.1 | MF775702_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 8836 | 9741 |
| ATE84455.1 | MF775702_p49 | hypothetical protein | phrog_7549 | unknown function | unknown function | -1 | 27387 | 27632 |
| ATE84429.1 | MF775702_p23 | lytic transglycosylase | phrog_3775 | transglycosylase | other | -1 | 18221 | 18382 |
| ATE84452.1 | MF775702_p46 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 26634 | 26855 |
| ATE84422.1 | MF775702_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11253 | 14003 |
| ATE84423.1 | MF775702_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14003 | 14899 |
| ATE84433.1 | MF775702_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19230 | 19397 |
| ATE84439.1 | MF775702_p33 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 20572 | 21234 |
| ATE84414.1 | MF775702_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5777 | 6091 |
| ATE84426.1 | MF775702_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16299 | 17093 |
| ATE84451.1 | MF775702_p45 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 25644 | 26540 |
| ATE84440.1 | MF775702_p34 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 21290 | 22198 |
| ATE84411.1 | MF775702_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3783 | 4319 |