Genomic map of Lactococcus phage LP1407 (MF775702)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF775702
Definition
Lactococcus phage LP1407, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
NUCCORE
Length
30508
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
34.9
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE84413.1 MF775702_p7 hypothetical protein phrog_1428 head-tail connector protein connector 1 5514 5777
ATE84454.1 MF775702_p48 repressor protein/antirepressor phrog_2977 anti-repressor transcription regulation -1 27176 27340
ATE84460.1 MF775702_p54 holiday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 29214 29696
ATE84412.1 MF775702_p6 major capsid protein phrog_1393 minor head protein head and packaging 1 4312 5493
ATE84461.1 MF775702_p55 hypothetical protein phrog_1652 unknown function unknown function 1 29693 29860
ATE84416.1 MF775702_p10 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6420 6785
ATE84428.1 MF775702_p22 lysin phrog_670 endolysin lysis 1 17465 18169
ATE84425.1 MF775702_p19 hypothetical protein phrog_1434 unknown function unknown function 1 16016 16309
ATE84424.1 MF775702_p18 tail associated lysin phrog_1432 tail associated lysin tail 1 14899 16026
ATE84420.1 MF775702_p14 hypothetical protein phrog_1420 virion structural protein head and packaging 1 10446 10721
ATE84445.1 MF775702_p39 hypothetical protein phrog_1295 unknown function unknown function -1 23627 23842
ATE84436.1 MF775702_p30 hypothetical protein phrog_3365 unknown function unknown function -1 19876 20064
ATE84437.1 MF775702_p31 hypothetical protein phrog_1225 unknown function unknown function -1 20139 20447
ATE84446.1 MF775702_p40 SSB protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 23858 24217
ATE84458.1 MF775702_p52 hypothetical protein phrog_1952 unknown function unknown function 1 28953 29081
ATE84448.1 MF775702_p42 hypothetical protein phrog_1449 unknown function unknown function -1 24831 25097
ATE84431.1 MF775702_p25 hypothetical protein phrog_3389 unknown function unknown function -1 18707 18886
ATE84459.1 MF775702_p53 hypothetical protein phrog_1436 unknown function unknown function 1 29086 29217
ATE84415.1 MF775702_p9 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6088 6429
ATE84456.1 MF775702_p50 hypothetical protein phrog_2413 unknown function unknown function -1 28152 28280
ATE84435.1 MF775702_p29 hypothetical protein phrog_1509 unknown function unknown function -1 19578 19814
ATE84432.1 MF775702_p26 hypothetical protein phrog_1415 unknown function unknown function -1 18883 19230
ATE84427.1 MF775702_p21 holin phrog_1379 unknown function unknown function 1 17115 17468
ATE84447.1 MF775702_p41 SAK protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 24221 24844
ATE84409.1 MF775702_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2369 2653
ATE84444.1 MF775702_p38 hypothetical protein phrog_1317 unknown function unknown function -1 23118 23630
ATE84419.1 MF775702_p12 major tail protein extension phrog_3791 major tail protein tail 1 8836 10426
ATE84441.1 MF775702_p35 hypothetical protein phrog_1825 DNA methyltransferase other -1 22191 22439
ATE84407.1 MF775702_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 232 756
ATE84443.1 MF775702_p37 hypothetical protein phrog_1919 unknown function unknown function -1 22733 23035
ATE84417.1 MF775702_p11 neck passage structure phrog_2370 neck passage structure connector 1 6842 8812
ATE84438.1 MF775702_p32 hypothetical protein phrog_1508 unknown function unknown function -1 20447 20566
ATE84449.1 MF775702_p43 hypothetical protein phrog_1632 unknown function unknown function -1 25051 25341
ATE84453.1 MF775702_p47 repressor protein/antirepressor singleton unknown function unknown function -1 26879 27019
ATE84442.1 MF775702_p36 hypothetical protein phrog_4582 unknown function unknown function -1 22525 22698
ATE84450.1 MF775702_p44 hypothetical protein phrog_1405 unknown function unknown function -1 25394 25651
ATE84421.1 MF775702_p15 hypothetical protein phrog_1421 virion structural protein head and packaging 1 10741 11253
ATE84410.1 MF775702_p4 portal protein phrog_12 portal protein head and packaging 1 2666 3802
ATE84430.1 MF775702_p24 hypothetical protein phrog_1430 unknown function unknown function -1 18444 18710
ATE84457.1 MF775702_p51 hypothetical protein phrog_1656 unknown function unknown function -1 28634 28822
ATE84434.1 MF775702_p28 hypothetical protein phrog_1820 unknown function unknown function -1 19397 19585
ATE84408.1 MF775702_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 757 2379
ATE84418.1 MF775702_p13 major tail protein phrog_1433 major tail protein tail 1 8836 9741
ATE84455.1 MF775702_p49 hypothetical protein phrog_7549 unknown function unknown function -1 27387 27632
ATE84429.1 MF775702_p23 lytic transglycosylase phrog_3775 transglycosylase other -1 18221 18382
ATE84452.1 MF775702_p46 hypothetical protein phrog_2541 unknown function unknown function -1 26634 26855
ATE84422.1 MF775702_p16 tape measure protein phrog_58 tail length tape measure protein tail 1 11253 14003
ATE84423.1 MF775702_p17 distal tail protein phrog_1424 tail protein tail 1 14003 14899
ATE84433.1 MF775702_p27 hypothetical protein phrog_1441 unknown function unknown function -1 19230 19397
ATE84439.1 MF775702_p33 methylase phrog_1071 DNA methyltransferase other -1 20572 21234
ATE84414.1 MF775702_p8 hypothetical protein phrog_1429 virion structural protein head and packaging 1 5777 6091
ATE84426.1 MF775702_p20 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16299 17093
ATE84451.1 MF775702_p45 hypothetical protein phrog_1284 unknown function unknown function -1 25644 26540
ATE84440.1 MF775702_p34 methylase phrog_56 DNA methyltransferase other -1 21290 22198
ATE84411.1 MF775702_p5 protease phrog_80 head maturation protease head and packaging 1 3783 4319