| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF775703 |
Definition |
Lactococcus phage LP1502a, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
30247 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
35.12 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE84470.1 | MF775703_p9 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6554 | 6868 |
| ATE84475.1 | MF775703_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10589 | 10864 |
| ATE84466.1 | MF775703_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3443 | 4579 |
| ATE84474.1 | MF775703_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 9646 | 10551 |
| ATE84488.1 | MF775703_p27 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 20289 | 20558 |
| ATE84508.1 | MF775703_p47 | hypothetical protein | phrog_12970 | unknown function | unknown function | -1 | 27437 | 27634 |
| ATE84499.1 | MF775703_p38 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23613 | 24122 |
| ATE84489.1 | MF775703_p28 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 20731 | 21078 |
| ATE84486.1 | MF775703_p25 | hypothetical protein | phrog_5087 | unknown function | unknown function | -1 | 19735 | 19992 |
| ATE84495.1 | MF775703_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 22427 | 22546 |
| ATE84497.1 | MF775703_p36 | hypothetical protein | phrog_10825 | unknown function | unknown function | -1 | 22849 | 23094 |
| ATE84506.1 | MF775703_p45 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 26203 | 26466 |
| ATE84505.1 | MF775703_p44 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 25772 | 26152 |
| ATE84498.1 | MF775703_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23249 | 23533 |
| ATE84512.1 | MF775703_p51 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28964 | 29443 |
| ATE84478.1 | MF775703_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 14146 | 15606 |
| ATE84492.1 | MF775703_p31 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 21423 | 21626 |
| ATE84502.1 | MF775703_p41 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24711 | 25277 |
| ATE84494.1 | MF775703_p33 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 22119 | 22427 |
| ATE84496.1 | MF775703_p35 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22604 | 22849 |
| ATE84504.1 | MF775703_p43 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 25485 | 25775 |
| ATE84471.1 | MF775703_p10 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6865 | 7206 |
| ATE84503.1 | MF775703_p42 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25274 | 25531 |
| ATE84479.1 | MF775703_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 15606 | 16733 |
| ATE84467.1 | MF775703_p6 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 4560 | 5096 |
| ATE84472.1 | MF775703_p11 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 7197 | 7562 |
| ATE84483.1 | MF775703_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 18179 | 18880 |
| ATE84481.1 | MF775703_p20 | receptor binding protein | phrog_6465 | tail protein | tail | 1 | 17006 | 17815 |
| ATE84485.1 | MF775703_p24 | lytic transglycosylase | phrog_3874 | transglycosylase | other | -1 | 19109 | 19693 |
| ATE84482.1 | MF775703_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17829 | 18182 |
| ATE84487.1 | MF775703_p26 | hypothetical protein | phrog_5152 | unknown function | unknown function | -1 | 20020 | 20268 |
| ATE84491.1 | MF775703_p30 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 21245 | 21394 |
| ATE84463.1 | MF775703_p2 | site-specific DNA-methyltransferase | phrog_67 | DNA methyltransferase | other | 1 | 773 | 1522 |
| ATE84501.1 | MF775703_p40 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24347 | 24706 |
| ATE84480.1 | MF775703_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16723 | 17016 |
| ATE84500.1 | MF775703_p39 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 24119 | 24334 |
| ATE84510.1 | MF775703_p49 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 28703 | 28831 |
| ATE84493.1 | MF775703_p32 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 21656 | 21913 |
| ATE84476.1 | MF775703_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10884 | 11396 |
| ATE84465.1 | MF775703_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 3146 | 3430 |
| ATE84468.1 | MF775703_p7 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 5089 | 6270 |
| ATE84507.1 | MF775703_p46 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 26459 | 27355 |
| ATE84509.1 | MF775703_p48 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28392 | 28571 |
| ATE84490.1 | MF775703_p29 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 21078 | 21245 |
| ATE84484.1 | MF775703_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18979 | 19146 |
| ATE84511.1 | MF775703_p50 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 28836 | 28967 |
| ATE84462.1 | MF775703_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 252 | 776 |
| ATE84477.1 | MF775703_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11396 | 14146 |
| ATE84513.1 | MF775703_p52 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29444 | 29611 |
| ATE84473.1 | MF775703_p12 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 7619 | 9622 |
| ATE84464.1 | MF775703_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1534 | 3156 |
| ATE84469.1 | MF775703_p8 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 6291 | 6554 |