| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF787246 |
Definition |
Lactobacillus phage LpeD, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; unclassified Herelleviridae. |
DB of origin |
NUCCORE |
Length |
145162 |
Host Name |
Lactobacillus pentosus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
100 |
%GC |
34.11 |
Number of singletons |
8 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATG86348.1 | MF787246_p41 | metallophosphatase | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 56368 | 57618 |
| ATG86387.1 | MF787246_p77 | hypothetical protein | phrog_32995 | unknown function | unknown function | -1 | 118626 | 118787 |
| ATG86400.1 | MF787246_p89 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 127213 | 129009 |
| ATG86330.1 | MF787246_p20 | tail fiber protein | phrog_7660 | tail fiber protein | tail | 1 | 24623 | 28111 |
| ATG86395.1 | MF787246_p84 | hypothetical protein | phrog_154 | replication initiation protein | DNA, RNA and nucleotide metabolism | -1 | 123568 | 123882 |
| ATG86388.1 | MF787246_p33 | nicotinamide riboside transporter | phrog_1880 | PnuC-like nicotinamide mononucleotide transport | moron, auxiliary metabolic gene and host takeover | -1 | 43395 | 44165 |
| ATG86331.1 | MF787246_p21 | hypothetical protein | phrog_31100 | unknown function | unknown function | 1 | 28115 | 28369 |
| ATG86315.1 | MF787246_p5 | terminase | phrog_675 | terminase large subunit | head and packaging | 1 | 4152 | 4808 |
| ATG86393.1 | MF787246_p82 | hypothetical protein | phrog_35102 | unknown function | unknown function | -1 | 122411 | 122821 |
| ATG86396.1 | MF787246_p85 | DUF1642 domain-containing protein | phrog_419 | unknown function | unknown function | -1 | 124026 | 124484 |
| ATG86313.1 | MF787246_p3 | terminase large subunit | phrog_675 | terminase large subunit | head and packaging | 1 | 1522 | 2571 |
| ATG86328.1 | MF787246_p18 | tail protein | phrog_1047 | tail associated lysin | tail | 1 | 17385 | 21371 |
| ATG86335.1 | MF787246_p25 | baseplate protein | phrog_975 | baseplate protein | tail | 1 | 30093 | 30788 |
| ATG86341.1 | MF787246_p34 | transcriptional regulator | phrog_1098 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 45144 | 46568 |
| ATG86371.1 | MF787246_p64 | hypothetical protein | phrog_17106 | unknown function | unknown function | 1 | 90938 | 91615 |
| ATG86361.1 | MF787246_p54 | hypothetical protein | phrog_984 | unknown function | unknown function | 1 | 77125 | 77889 |
| ATG86321.1 | MF787246_p11 | hypothetical protein | phrog_17976 | unknown function | unknown function | 1 | 11971 | 12648 |
| ATG86324.1 | MF787246_p14 | tail sheath protein | phrog_279 | tail sheath | tail | 1 | 13772 | 15619 |
| ATG86406.1 | MF787246_p95 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 137992 | 138612 |
| ATG86322.1 | MF787246_p12 | hypothetical protein | phrog_1000 | unknown function | unknown function | 1 | 12662 | 13552 |
| ATG86347.1 | MF787246_p40 | deoxynucleoside kinase | phrog_761 | thymidylate kinase | other | 1 | 53190 | 53924 |
| ATG86323.1 | MF787246_p13 | hypothetical protein | phrog_1151 | unknown function | unknown function | 1 | 13539 | 13757 |
| ATG86346.1 | MF787246_p39 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 52126 | 53133 |
| ATG86360.1 | MF787246_p53 | hypothetical protein | phrog_4417 | unknown function | unknown function | 1 | 74868 | 75746 |
| ATG86409.1 | MF787246_p98 | hypothetical protein | phrog_23942 | unknown function | unknown function | -1 | 141087 | 141692 |
| ATG86352.1 | MF787246_p45 | bacterial nucleoid DNA-binding protein | phrog_379 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59745 | 60068 |
| ATG86356.1 | MF787246_p49 | hypothetical protein | phrog_18678 | unknown function | unknown function | 1 | 70308 | 71501 |
| ATG86320.1 | MF787246_p10 | hypothetical protein | phrog_1004 | virion structural protein | head and packaging | 1 | 11061 | 11978 |
| ATG86337.1 | MF787246_p27 | hypothetical protein | phrog_13726 | unknown function | unknown function | 1 | 32207 | 34510 |
| ATG86401.1 | MF787246_p90 | mRNA interferase | phrog_1936 | MazF-like growth inhibitor | moron, auxiliary metabolic gene and host takeover | -1 | 129479 | 129817 |
| ATG86405.1 | MF787246_p94 | DNA-binding ferritin-like protein | phrog_3636 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 135687 | 136199 |
| ATG86368.1 | MF787246_p61 | hypothetical protein | phrog_11757 | unknown function | unknown function | 1 | 85585 | 86016 |
| ATG86408.1 | MF787246_p97 | hypothetical protein | singleton | unknown function | unknown function | -1 | 140261 | 140719 |
| ATG86367.1 | MF787246_p60 | HNH endonuclease | phrog_25184 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 84960 | 85574 |
| ATG86365.1 | MF787246_p58 | hypothetical protein | phrog_3784 | unknown function | unknown function | 1 | 82558 | 82998 |
| ATG86383.1 | MF787246_p1 | hypothetical protein | phrog_25855 | unknown function | unknown function | -1 | 340 | 729 |
| ATG86338.1 | MF787246_p28 | hypothetical protein | phrog_1394 | virion structural protein | head and packaging | 1 | 34563 | 35081 |
| ATG86327.1 | MF787246_p17 | tapemeasure chaperone protein | phrog_1316 | RNA polymerase beta subunit | DNA, RNA and nucleotide metabolism | 1 | 16873 | 17343 |
| ATG86403.1 | MF787246_p92 | nicotinamide mononucleotide transporter | phrog_1880 | PnuC-like nicotinamide mononucleotide transport | moron, auxiliary metabolic gene and host takeover | -1 | 132946 | 133692 |
| ATG86375.1 | MF787246_p68 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 96777 | 97232 |
| ATG86402.1 | MF787246_p91 | cytoplasmic protein | singleton | unknown function | unknown function | -1 | 130469 | 132709 |
| ATG86379.1 | MF787246_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 106473 | 106664 |
| ATG86386.1 | MF787246_p76 | hypothetical protein | phrog_15366 | unknown function | unknown function | -1 | 117246 | 117821 |
| ATG86376.1 | MF787246_p69 | tellurite resistance protein | phrog_5890 | tellurite resistance | moron, auxiliary metabolic gene and host takeover | 1 | 98926 | 100032 |
| ATG86394.1 | MF787246_p83 | hypothetical protein | phrog_4188 | unknown function | unknown function | -1 | 122849 | 122983 |
| ATG86407.1 | MF787246_p96 | hypothetical protein | phrog_25372 | unknown function | unknown function | -1 | 139947 | 140255 |
| ATG86384.1 | MF787246_p31 | ADP-ribose pyrophosphatase | phrog_1185 | nudix hydrolase | other | -1 | 41757 | 42293 |
| ATG86336.1 | MF787246_p26 | baseplate J family protein | phrog_6 | baseplate wedge subunit | tail | 1 | 30805 | 32193 |
| ATG86318.1 | MF787246_p8 | major capsid protein | phrog_752 | major head protein | head and packaging | 1 | 8457 | 9938 |
| ATG86355.1 | MF787246_p48 | hypothetical protein | phrog_2058 | unknown function | unknown function | 1 | 69754 | 70239 |
| ATG86343.1 | MF787246_p36 | DNA repair exonuclease SbcCD nuclease subunit | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48088 | 49182 |
| ATG86339.1 | MF787246_p29 | hypothetical protein | phrog_877 | unknown function | unknown function | 1 | 35096 | 39358 |
| ATG86319.1 | MF787246_p9 | hypothetical protein | phrog_772 | tail fiber protein | tail | 1 | 10126 | 11046 |
| ATG86363.1 | MF787246_p56 | hypothetical protein | phrog_1017 | unknown function | unknown function | 1 | 81170 | 81724 |
| ATG86404.1 | MF787246_p93 | phosphatidylglycerophosphatase | phrog_12432 | phosphatidylglycerophosphatase A | other | -1 | 135200 | 135694 |
| ATG86357.1 | MF787246_p50 | recombinase A | phrog_97 | UvsX-like recombinase | other | 1 | 71519 | 72751 |
| ATG86316.1 | MF787246_p6 | hypothetical protein | phrog_12 | portal protein | head and packaging | 1 | 4917 | 6488 |
| ATG86373.1 | MF787246_p66 | AAA superfamily ATPase | phrog_2376 | ATPase | other | 1 | 94897 | 96018 |
| ATG86380.1 | MF787246_p73 | transmembrane fragile-X-F protein | phrog_1374 | unknown function | unknown function | 1 | 107151 | 107318 |
| ATG86389.1 | MF787246_p78 | hypothetical protein | phrog_17983 | unknown function | unknown function | -1 | 118798 | 119046 |
| ATG86369.1 | MF787246_p62 | RNA ligase | phrog_8238 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 87359 | 89731 |
| ATG86345.1 | MF787246_p38 | hypothetical protein | phrog_1070 | anti-sigma factor | moron, auxiliary metabolic gene and host takeover | 1 | 51395 | 52093 |
| ATG86366.1 | MF787246_p59 | glycosyl transferase family 2 | phrog_22973 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 83067 | 84551 |
| ATG86410.1 | MF787246_p99 | hypothetical protein | singleton | unknown function | unknown function | -1 | 142768 | 143547 |
| ATG86340.1 | MF787246_p30 | lysin | phrog_291 | endolysin | lysis | 1 | 39882 | 41285 |
| ATG86398.1 | MF787246_p87 | hypothetical protein | singleton | unknown function | unknown function | -1 | 124770 | 125180 |
| ATG86329.1 | MF787246_p19 | tail lysin | phrog_1015 | tail protein with lysin activity | tail | 1 | 21387 | 24503 |
| ATG86370.1 | MF787246_p63 | hypothetical protein | phrog_11757 | unknown function | unknown function | 1 | 90111 | 90446 |
| ATG86362.1 | MF787246_p55 | hypothetical protein | phrog_3169 | unknown function | unknown function | 1 | 77965 | 79560 |
| ATG86378.1 | MF787246_p71 | hypothetical protein | phrog_4264 | unknown function | unknown function | 1 | 106175 | 106444 |
| ATG86325.1 | MF787246_p15 | tail sheath protein | phrog_985 | virion structural protein | head and packaging | 1 | 15635 | 16105 |
| ATG86350.1 | MF787246_p43 | resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 58235 | 58894 |
| ATG86351.1 | MF787246_p44 | hypothetical protein | phrog_1054 | unknown function | unknown function | 1 | 59129 | 59755 |
| ATG86399.1 | MF787246_p88 | hypothetical protein | phrog_236 | nucleotide kinase | other | -1 | 125636 | 125908 |
| ATG86377.1 | MF787246_p70 | hypothetical protein | phrog_1007 | unknown function | unknown function | 1 | 101689 | 102390 |
| ATG86385.1 | MF787246_p32 | nicotinamide-nucleotide adenylyltransferase | phrog_3462 | nicotinamide-nucleotide adenylyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 42296 | 43402 |
| ATG86382.1 | MF787246_p75 | hypothetical protein | phrog_19036 | unknown function | unknown function | 1 | 108275 | 108778 |
| ATG86390.1 | MF787246_p79 | DNA ligase | phrog_548 | RNA ligase | DNA, RNA and nucleotide metabolism | -1 | 120003 | 120944 |
| ATG86332.1 | MF787246_p22 | hypothetical protein | phrog_1401 | unknown function | unknown function | 1 | 28393 | 28809 |
| ATG86374.1 | MF787246_p67 | hypothetical protein | phrog_4400 | unknown function | unknown function | 1 | 96085 | 96762 |
| ATG86314.1 | MF787246_p4 | group I intron protein | phrog_559 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 3269 | 4054 |
| ATG86334.1 | MF787246_p24 | hypothetical protein | phrog_1073 | unknown function | unknown function | 1 | 29511 | 30035 |
| ATG86342.1 | MF787246_p35 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 46586 | 48085 |
| ATG86349.1 | MF787246_p42 | hypothetical protein | phrog_21238 | unknown function | unknown function | 1 | 57619 | 58134 |
| ATG86353.1 | MF787246_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60081 | 62684 |
| ATG86381.1 | MF787246_p74 | hypothetical protein | phrog_10700 | unknown function | unknown function | 1 | 107340 | 107729 |
| ATG86326.1 | MF787246_p16 | hypothetical protein | phrog_15939 | tail assembly chaperone | tail | 1 | 16239 | 16820 |
| ATG86333.1 | MF787246_p23 | hypothetical protein | phrog_1011 | virion structural protein | head and packaging | 1 | 28824 | 29495 |
| ATG86317.1 | MF787246_p7 | prohead protease | phrog_1028 | head maturation protease | head and packaging | 1 | 6567 | 7379 |
| ATG86358.1 | MF787246_p51 | hypothetical protein | phrog_1089 | unknown function | unknown function | 1 | 72744 | 73067 |
| ATG86364.1 | MF787246_p57 | hypothetical protein | phrog_918 | unknown function | unknown function | 1 | 82286 | 82543 |
| ATG86359.1 | MF787246_p52 | glycoprotein | phrog_14018 | major tail protein | tail | 1 | 74451 | 74855 |
| ATG86391.1 | MF787246_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 121152 | 121595 |
| ATG86372.1 | MF787246_p65 | hypothetical protein | phrog_2376 | ATPase | other | 1 | 93731 | 94831 |
| ATG86392.1 | MF787246_p81 | DNA binding protein | phrog_1992 | MazG-like pyrophosphatase | other | -1 | 121611 | 122228 |
| ATG86397.1 | MF787246_p86 | hypothetical protein | phrog_1494 | unknown function | unknown function | -1 | 124509 | 124757 |
| ATG86312.1 | MF787246_p2 | hypothetical protein | phrog_1063 | terminase small subunit | head and packaging | 1 | 1097 | 1522 |
| ATG86354.1 | MF787246_p47 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 65174 | 68176 |
| ATG86344.1 | MF787246_p37 | recombination related exonuclease | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49504 | 51405 |
| ATG86411.1 | MF787246_p100 | peptidoglycan-binding protein | singleton | unknown function | unknown function | -1 | 144080 | 144505 |