Genomic map of Lactobacillus phage LpeD (MF787246)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF787246
Definition
Lactobacillus phage LpeD, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; unclassified Herelleviridae.
DB of origin
NUCCORE
Length
145162
Host Name
Lactobacillus pentosus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
100
%GC
34.11
Number of singletons
8
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATG86348.1 MF787246_p41 metallophosphatase phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 56368 57618
ATG86387.1 MF787246_p77 hypothetical protein phrog_32995 unknown function unknown function -1 118626 118787
ATG86400.1 MF787246_p89 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 127213 129009
ATG86330.1 MF787246_p20 tail fiber protein phrog_7660 tail fiber protein tail 1 24623 28111
ATG86395.1 MF787246_p84 hypothetical protein phrog_154 replication initiation protein DNA, RNA and nucleotide metabolism -1 123568 123882
ATG86388.1 MF787246_p33 nicotinamide riboside transporter phrog_1880 PnuC-like nicotinamide mononucleotide transport moron, auxiliary metabolic gene and host takeover -1 43395 44165
ATG86331.1 MF787246_p21 hypothetical protein phrog_31100 unknown function unknown function 1 28115 28369
ATG86315.1 MF787246_p5 terminase phrog_675 terminase large subunit head and packaging 1 4152 4808
ATG86393.1 MF787246_p82 hypothetical protein phrog_35102 unknown function unknown function -1 122411 122821
ATG86396.1 MF787246_p85 DUF1642 domain-containing protein phrog_419 unknown function unknown function -1 124026 124484
ATG86313.1 MF787246_p3 terminase large subunit phrog_675 terminase large subunit head and packaging 1 1522 2571
ATG86328.1 MF787246_p18 tail protein phrog_1047 tail associated lysin tail 1 17385 21371
ATG86335.1 MF787246_p25 baseplate protein phrog_975 baseplate protein tail 1 30093 30788
ATG86341.1 MF787246_p34 transcriptional regulator phrog_1098 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 45144 46568
ATG86371.1 MF787246_p64 hypothetical protein phrog_17106 unknown function unknown function 1 90938 91615
ATG86361.1 MF787246_p54 hypothetical protein phrog_984 unknown function unknown function 1 77125 77889
ATG86321.1 MF787246_p11 hypothetical protein phrog_17976 unknown function unknown function 1 11971 12648
ATG86324.1 MF787246_p14 tail sheath protein phrog_279 tail sheath tail 1 13772 15619
ATG86406.1 MF787246_p95 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 137992 138612
ATG86322.1 MF787246_p12 hypothetical protein phrog_1000 unknown function unknown function 1 12662 13552
ATG86347.1 MF787246_p40 deoxynucleoside kinase phrog_761 thymidylate kinase other 1 53190 53924
ATG86323.1 MF787246_p13 hypothetical protein phrog_1151 unknown function unknown function 1 13539 13757
ATG86346.1 MF787246_p39 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 52126 53133
ATG86360.1 MF787246_p53 hypothetical protein phrog_4417 unknown function unknown function 1 74868 75746
ATG86409.1 MF787246_p98 hypothetical protein phrog_23942 unknown function unknown function -1 141087 141692
ATG86352.1 MF787246_p45 bacterial nucleoid DNA-binding protein phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 59745 60068
ATG86356.1 MF787246_p49 hypothetical protein phrog_18678 unknown function unknown function 1 70308 71501
ATG86320.1 MF787246_p10 hypothetical protein phrog_1004 virion structural protein head and packaging 1 11061 11978
ATG86337.1 MF787246_p27 hypothetical protein phrog_13726 unknown function unknown function 1 32207 34510
ATG86401.1 MF787246_p90 mRNA interferase phrog_1936 MazF-like growth inhibitor moron, auxiliary metabolic gene and host takeover -1 129479 129817
ATG86405.1 MF787246_p94 DNA-binding ferritin-like protein phrog_3636 DNA binding protein DNA, RNA and nucleotide metabolism -1 135687 136199
ATG86368.1 MF787246_p61 hypothetical protein phrog_11757 unknown function unknown function 1 85585 86016
ATG86408.1 MF787246_p97 hypothetical protein singleton unknown function unknown function -1 140261 140719
ATG86367.1 MF787246_p60 HNH endonuclease phrog_25184 HNH endonuclease DNA, RNA and nucleotide metabolism 1 84960 85574
ATG86365.1 MF787246_p58 hypothetical protein phrog_3784 unknown function unknown function 1 82558 82998
ATG86383.1 MF787246_p1 hypothetical protein phrog_25855 unknown function unknown function -1 340 729
ATG86338.1 MF787246_p28 hypothetical protein phrog_1394 virion structural protein head and packaging 1 34563 35081
ATG86327.1 MF787246_p17 tapemeasure chaperone protein phrog_1316 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 16873 17343
ATG86403.1 MF787246_p92 nicotinamide mononucleotide transporter phrog_1880 PnuC-like nicotinamide mononucleotide transport moron, auxiliary metabolic gene and host takeover -1 132946 133692
ATG86375.1 MF787246_p68 hypothetical protein phrog_335 phosphatase other 1 96777 97232
ATG86402.1 MF787246_p91 cytoplasmic protein singleton unknown function unknown function -1 130469 132709
ATG86379.1 MF787246_p72 hypothetical protein singleton unknown function unknown function 1 106473 106664
ATG86386.1 MF787246_p76 hypothetical protein phrog_15366 unknown function unknown function -1 117246 117821
ATG86376.1 MF787246_p69 tellurite resistance protein phrog_5890 tellurite resistance moron, auxiliary metabolic gene and host takeover 1 98926 100032
ATG86394.1 MF787246_p83 hypothetical protein phrog_4188 unknown function unknown function -1 122849 122983
ATG86407.1 MF787246_p96 hypothetical protein phrog_25372 unknown function unknown function -1 139947 140255
ATG86384.1 MF787246_p31 ADP-ribose pyrophosphatase phrog_1185 nudix hydrolase other -1 41757 42293
ATG86336.1 MF787246_p26 baseplate J family protein phrog_6 baseplate wedge subunit tail 1 30805 32193
ATG86318.1 MF787246_p8 major capsid protein phrog_752 major head protein head and packaging 1 8457 9938
ATG86355.1 MF787246_p48 hypothetical protein phrog_2058 unknown function unknown function 1 69754 70239
ATG86343.1 MF787246_p36 DNA repair exonuclease SbcCD nuclease subunit phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 48088 49182
ATG86339.1 MF787246_p29 hypothetical protein phrog_877 unknown function unknown function 1 35096 39358
ATG86319.1 MF787246_p9 hypothetical protein phrog_772 tail fiber protein tail 1 10126 11046
ATG86363.1 MF787246_p56 hypothetical protein phrog_1017 unknown function unknown function 1 81170 81724
ATG86404.1 MF787246_p93 phosphatidylglycerophosphatase phrog_12432 phosphatidylglycerophosphatase A other -1 135200 135694
ATG86357.1 MF787246_p50 recombinase A phrog_97 UvsX-like recombinase other 1 71519 72751
ATG86316.1 MF787246_p6 hypothetical protein phrog_12 portal protein head and packaging 1 4917 6488
ATG86373.1 MF787246_p66 AAA superfamily ATPase phrog_2376 ATPase other 1 94897 96018
ATG86380.1 MF787246_p73 transmembrane fragile-X-F protein phrog_1374 unknown function unknown function 1 107151 107318
ATG86389.1 MF787246_p78 hypothetical protein phrog_17983 unknown function unknown function -1 118798 119046
ATG86369.1 MF787246_p62 RNA ligase phrog_8238 RNA ligase DNA, RNA and nucleotide metabolism 1 87359 89731
ATG86345.1 MF787246_p38 hypothetical protein phrog_1070 anti-sigma factor moron, auxiliary metabolic gene and host takeover 1 51395 52093
ATG86366.1 MF787246_p59 glycosyl transferase family 2 phrog_22973 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 83067 84551
ATG86410.1 MF787246_p99 hypothetical protein singleton unknown function unknown function -1 142768 143547
ATG86340.1 MF787246_p30 lysin phrog_291 endolysin lysis 1 39882 41285
ATG86398.1 MF787246_p87 hypothetical protein singleton unknown function unknown function -1 124770 125180
ATG86329.1 MF787246_p19 tail lysin phrog_1015 tail protein with lysin activity tail 1 21387 24503
ATG86370.1 MF787246_p63 hypothetical protein phrog_11757 unknown function unknown function 1 90111 90446
ATG86362.1 MF787246_p55 hypothetical protein phrog_3169 unknown function unknown function 1 77965 79560
ATG86378.1 MF787246_p71 hypothetical protein phrog_4264 unknown function unknown function 1 106175 106444
ATG86325.1 MF787246_p15 tail sheath protein phrog_985 virion structural protein head and packaging 1 15635 16105
ATG86350.1 MF787246_p43 resolvase phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 58235 58894
ATG86351.1 MF787246_p44 hypothetical protein phrog_1054 unknown function unknown function 1 59129 59755
ATG86399.1 MF787246_p88 hypothetical protein phrog_236 nucleotide kinase other -1 125636 125908
ATG86377.1 MF787246_p70 hypothetical protein phrog_1007 unknown function unknown function 1 101689 102390
ATG86385.1 MF787246_p32 nicotinamide-nucleotide adenylyltransferase phrog_3462 nicotinamide-nucleotide adenylyltransferase moron, auxiliary metabolic gene and host takeover -1 42296 43402
ATG86382.1 MF787246_p75 hypothetical protein phrog_19036 unknown function unknown function 1 108275 108778
ATG86390.1 MF787246_p79 DNA ligase phrog_548 RNA ligase DNA, RNA and nucleotide metabolism -1 120003 120944
ATG86332.1 MF787246_p22 hypothetical protein phrog_1401 unknown function unknown function 1 28393 28809
ATG86374.1 MF787246_p67 hypothetical protein phrog_4400 unknown function unknown function 1 96085 96762
ATG86314.1 MF787246_p4 group I intron protein phrog_559 HNH endonuclease DNA, RNA and nucleotide metabolism 1 3269 4054
ATG86334.1 MF787246_p24 hypothetical protein phrog_1073 unknown function unknown function 1 29511 30035
ATG86342.1 MF787246_p35 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 46586 48085
ATG86349.1 MF787246_p42 hypothetical protein phrog_21238 unknown function unknown function 1 57619 58134
ATG86353.1 MF787246_p46 hypothetical protein singleton unknown function unknown function 1 60081 62684
ATG86381.1 MF787246_p74 hypothetical protein phrog_10700 unknown function unknown function 1 107340 107729
ATG86326.1 MF787246_p16 hypothetical protein phrog_15939 tail assembly chaperone tail 1 16239 16820
ATG86333.1 MF787246_p23 hypothetical protein phrog_1011 virion structural protein head and packaging 1 28824 29495
ATG86317.1 MF787246_p7 prohead protease phrog_1028 head maturation protease head and packaging 1 6567 7379
ATG86358.1 MF787246_p51 hypothetical protein phrog_1089 unknown function unknown function 1 72744 73067
ATG86364.1 MF787246_p57 hypothetical protein phrog_918 unknown function unknown function 1 82286 82543
ATG86359.1 MF787246_p52 glycoprotein phrog_14018 major tail protein tail 1 74451 74855
ATG86391.1 MF787246_p80 hypothetical protein singleton unknown function unknown function -1 121152 121595
ATG86372.1 MF787246_p65 hypothetical protein phrog_2376 ATPase other 1 93731 94831
ATG86392.1 MF787246_p81 DNA binding protein phrog_1992 MazG-like pyrophosphatase other -1 121611 122228
ATG86397.1 MF787246_p86 hypothetical protein phrog_1494 unknown function unknown function -1 124509 124757
ATG86312.1 MF787246_p2 hypothetical protein phrog_1063 terminase small subunit head and packaging 1 1097 1522
ATG86354.1 MF787246_p47 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 65174 68176
ATG86344.1 MF787246_p37 recombination related exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 49504 51405
ATG86411.1 MF787246_p100 peptidoglycan-binding protein singleton unknown function unknown function -1 144080 144505