| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF919492 |
Definition |
Mycobacterium phage Arib1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pclasvirinae; Fishburnevirus; unclassified Fishburnevirus. |
DB of origin |
NUCCORE |
Length |
46732 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
78 |
%GC |
67.47 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATN87202.1 | MF919492_p58 | hypothetical protein | phrog_5921 | unknown function | unknown function | 1 | 37535 | 37687 |
| ATN87187.1 | MF919492_p42 | hypothetical protein | phrog_5559 | unknown function | unknown function | 1 | 31087 | 31266 |
| ATN87173.1 | MF919492_p28 | hypothetical protein | phrog_443 | holin | lysis | 1 | 25246 | 25494 |
| ATN87213.1 | MF919492_p69 | hypothetical protein | phrog_17037 | unknown function | unknown function | 1 | 43343 | 43486 |
| ATN87212.1 | MF919492_p68 | hypothetical protein | phrog_5855 | unknown function | unknown function | 1 | 42771 | 43271 |
| ATN87162.1 | MF919492_p17 | tapemeasure protein | phrog_2337 | tail length tape measure protein | tail | 1 | 10864 | 14649 |
| ATN87189.1 | MF919492_p44 | hypothetical protein | phrog_11260 | unknown function | unknown function | 1 | 31355 | 31477 |
| ATN87206.1 | MF919492_p62 | hypothetical protein | phrog_3599 | unknown function | unknown function | 1 | 40287 | 40829 |
| ATN87192.1 | MF919492_p47 | ssDNA binding protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32549 | 33544 |
| ATN87211.1 | MF919492_p67 | hypothetical protein | phrog_10505 | unknown function | unknown function | 1 | 42516 | 42698 |
| ATN87184.1 | MF919492_p39 | hypothetical protein | phrog_4656 | unknown function | unknown function | 1 | 30316 | 30549 |
| ATN87146.1 | MF919492_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 55 | 444 |
| ATN87222.1 | MF919492_p73 | hypothetical protein | phrog_4550 | unknown function | unknown function | 1 | 44656 | 44829 |
| ATN87188.1 | MF919492_p43 | hypothetical protein | phrog_5806 | unknown function | unknown function | 1 | 31263 | 31394 |
| ATN87155.1 | MF919492_p10 | head-to-tail connector protein | phrog_2322 | head-tail connector protein | connector | 1 | 7321 | 7644 |
| ATN87195.1 | MF919492_p50 | resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 34850 | 35353 |
| ATN87158.1 | MF919492_p13 | head-to-tail connector protein | phrog_813 | head-tail adaptor | connector | 1 | 8287 | 8724 |
| ATN87183.1 | MF919492_p38 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 29810 | 30316 |
| ATN87186.1 | MF919492_p41 | hypothetical protein | phrog_5803 | unknown function | unknown function | 1 | 30818 | 31090 |
| ATN87179.1 | MF919492_p34 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 27945 | 28808 |
| ATN87193.1 | MF919492_p48 | hypothetical protein | phrog_4387 | unknown function | unknown function | 1 | 33541 | 33789 |
| ATN87163.1 | MF919492_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 14646 | 16391 |
| ATN87180.1 | MF919492_p35 | hypothetical protein | phrog_3507 | unknown function | unknown function | 1 | 28805 | 29104 |
| ATN87176.1 | MF919492_p31 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 26952 | 27353 |
| ATN87148.1 | MF919492_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 2106 | 3569 |
| ATN87198.1 | MF919492_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35867 | 36199 |
| ATN87218.1 | MF919492_p75 | hypothetical protein | phrog_6617 | unknown function | unknown function | 1 | 45198 | 45536 |
| ATN87205.1 | MF919492_p61 | helix-turn-helix DNA binding domain protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 39295 | 40290 |
| ATN87149.1 | MF919492_p4 | capsid maturation protease | phrog_2976 | head maturation protease | head and packaging | 1 | 3560 | 4894 |
| ATN87221.1 | MF919492_p78 | HNH endonuclease | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46141 | 46524 |
| ATN87209.1 | MF919492_p65 | hypothetical protein | phrog_18047 | unknown function | unknown function | 1 | 41991 | 42257 |
| ATN87170.1 | MF919492_p25 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 22882 | 23055 |
| ATN87169.1 | MF919492_p24 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22523 | 22885 |
| ATN87156.1 | MF919492_p11 | head-to-tail connector protein | phrog_4307 | unknown function | unknown function | 1 | 7644 | 7913 |
| ATN87157.1 | MF919492_p12 | head-to-tail connector protein | phrog_2325 | minor tail protein | tail | 1 | 7913 | 8290 |
| ATN87150.1 | MF919492_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4896 | 5261 |
| ATN87151.1 | MF919492_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5299 | 6243 |
| ATN87219.1 | MF919492_p76 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 45533 | 45901 |
| ATN87196.1 | MF919492_p51 | hypothetical protein | phrog_6109 | unknown function | unknown function | 1 | 35347 | 35589 |
| ATN87215.1 | MF919492_p71 | hypothetical protein | phrog_2761 | unknown function | unknown function | 1 | 43881 | 44192 |
| ATN87217.1 | MF919492_p74 | RHH DNA binding protein | phrog_4738 | transcriptional repressor | transcription regulation | 1 | 44826 | 44999 |
| ATN87207.1 | MF919492_p63 | hypothetical protein | phrog_7254 | unknown function | unknown function | 1 | 40826 | 41092 |
| ATN87214.1 | MF919492_p70 | hypothetical protein | phrog_18896 | unknown function | unknown function | 1 | 43483 | 43809 |
| ATN87171.1 | MF919492_p26 | lysin A | phrog_6707 | endolysin | lysis | 1 | 23126 | 24061 |
| ATN87203.1 | MF919492_p59 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 37790 | 39160 |
| ATN87160.1 | MF919492_p16 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9932 | 10531 |
| ATN87168.1 | MF919492_p23 | hypothetical protein | phrog_6374 | unknown function | unknown function | 1 | 22357 | 22506 |
| ATN87191.1 | MF919492_p46 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 31623 | 32552 |
| ATN87223.1 | MF919492_p54 | hypothetical protein | phrog_2001 | unknown function | unknown function | 1 | 36196 | 36321 |
| ATN87154.1 | MF919492_p9 | head-to-tail connector protein | phrog_6553 | head closure Hc1 | connector | 1 | 6956 | 7306 |
| ATN87178.1 | MF919492_p33 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 27712 | 27948 |
| ATN87199.1 | MF919492_p55 | DNA methylase | phrog_2060 | DNA methyltransferase | other | 1 | 36318 | 36641 |
| ATN87147.1 | MF919492_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 413 | 2089 |
| ATN87216.1 | MF919492_p72 | hypothetical protein | phrog_2202 | unknown function | unknown function | 1 | 44189 | 44659 |
| ATN87182.1 | MF919492_p37 | hypothetical protein | phrog_5015 | unknown function | unknown function | 1 | 29346 | 29747 |
| ATN87190.1 | MF919492_p45 | hypothetical protein | phrog_4702 | unknown function | unknown function | 1 | 31477 | 31626 |
| ATN87153.1 | MF919492_p8 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6594 | 6956 |
| ATN87152.1 | MF919492_p7 | head-to-tail connector protein | phrog_2322 | head-tail connector protein | connector | 1 | 6243 | 6590 |
| ATN87166.1 | MF919492_p21 | minor tail protein | phrog_3493 | minor tail protein | tail | 1 | 19044 | 21305 |
| ATN87172.1 | MF919492_p27 | lysin B | phrog_102 | endolysin | lysis | 1 | 24058 | 25224 |
| ATN87208.1 | MF919492_p64 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 41089 | 41991 |
| ATN87165.1 | MF919492_p20 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 18150 | 19043 |
| ATN87167.1 | MF919492_p22 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 21305 | 22342 |
| ATN87164.1 | MF919492_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16391 | 18127 |
| ATN87174.1 | MF919492_p29 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 25491 | 25850 |
| ATN87159.1 | MF919492_p14 | major tail protein | phrog_476 | major tail protein | tail | 1 | 8818 | 9816 |
| ATN87220.1 | MF919492_p77 | hypothetical protein | phrog_7285 | unknown function | unknown function | 1 | 45888 | 46136 |
| ATN87161.1 | MF919492_p15 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9932 | 10850 |
| ATN87185.1 | MF919492_p40 | hypothetical protein | phrog_4981 | unknown function | unknown function | 1 | 30546 | 30821 |
| ATN87177.1 | MF919492_p32 | excise protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 27470 | 27715 |
| ATN87210.1 | MF919492_p66 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 42262 | 42516 |
| ATN87197.1 | MF919492_p52 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 35586 | 35870 |
| ATN87175.1 | MF919492_p30 | integrase | phrog_1 | integrase | integration and excision | -1 | 25924 | 26880 |
| ATN87181.1 | MF919492_p36 | hypothetical protein | phrog_9041 | unknown function | unknown function | 1 | 29101 | 29349 |
| ATN87194.1 | MF919492_p49 | DNA translocase | phrog_6152 | unknown function | unknown function | 1 | 33786 | 34853 |
| ATN87204.1 | MF919492_p60 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 39157 | 39291 |
| ATN87200.1 | MF919492_p56 | hypothetical protein | phrog_17383 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36638 | 36877 |
| ATN87201.1 | MF919492_p57 | HTH DNA binding protein | phrog_7170 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36874 | 37542 |