| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF919506 |
Definition |
Mycobacterium phage FireRed, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
NUCCORE |
Length |
76217 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
148 |
%GC |
62.98 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATN89138.1 | MF919506_p42 | hypothetical protein | phrog_5831 | unknown function | unknown function | -1 | 34928 | 35110 |
| ATN89152.1 | MF919506_p56 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 39601 | 39840 |
| ATN89125.1 | MF919506_p29 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28578 | 29006 |
| ATN89203.1 | MF919506_p107 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 62228 | 62518 |
| ATN89144.1 | MF919506_p48 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 36400 | 36573 |
| ATN89213.1 | MF919506_p117 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 66984 | 67121 |
| ATN89185.1 | MF919506_p89 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 52887 | 53252 |
| ATN89162.1 | MF919506_p66 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 43708 | 43815 |
| ATN89118.1 | MF919506_p22 | tapemeasure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 13359 | 18095 |
| ATN89126.1 | MF919506_p30 | helix-turn-helix DNA binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28993 | 29178 |
| ATN89155.1 | MF919506_p59 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 41343 | 41441 |
| ATN89159.1 | MF919506_p63 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 42562 | 42840 |
| ATN89214.1 | MF919506_p118 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 67108 | 67281 |
| ATN89132.1 | MF919506_p36 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32740 | 33156 |
| ATN89117.1 | MF919506_p21 | HNH endonuclease | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 12888 | 13358 |
| ATN89112.1 | MF919506_p16 | head-to-tail connector protein | phrog_2805 | minor tail protein | tail | 1 | 10099 | 10479 |
| ATN89098.1 | MF919506_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| ATN89220.1 | MF919506_p124 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 68476 | 68613 |
| ATN89211.1 | MF919506_p115 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 65775 | 66017 |
| ATN89178.1 | MF919506_p82 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49786 | 50022 |
| ATN89140.1 | MF919506_p44 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35316 | 35594 |
| ATN89163.1 | MF919506_p67 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43823 | 44122 |
| ATN89121.1 | MF919506_p25 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21462 | 22295 |
| ATN89173.1 | MF919506_p77 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 48298 | 48663 |
| ATN89147.1 | MF919506_p51 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36966 | 37181 |
| ATN89167.1 | MF919506_p71 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 45060 | 46028 |
| ATN89233.1 | MF919506_p137 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 72304 | 72540 |
| ATN89202.1 | MF919506_p106 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 61871 | 62227 |
| ATN89230.1 | MF919506_p134 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 71305 | 71634 |
| ATN89115.1 | MF919506_p20 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 11979 | 12440 |
| ATN89212.1 | MF919506_p116 | DNA recombinase | phrog_97 | UvsX-like recombinase | other | 1 | 66025 | 66987 |
| ATN89226.1 | MF919506_p130 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 69704 | 70093 |
| ATN89216.1 | MF919506_p120 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 67467 | 67721 |
| ATN89199.1 | MF919506_p103 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60340 | 60780 |
| ATN89156.1 | MF919506_p60 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 41438 | 41575 |
| ATN89184.1 | MF919506_p88 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 52673 | 52894 |
| ATN89236.1 | MF919506_p140 | hypothetical protein | phrog_4496 | unknown function | unknown function | -1 | 73502 | 73855 |
| ATN89123.1 | MF919506_p27 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24705 | 27545 |
| ATN89119.1 | MF919506_p23 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18125 | 19786 |
| ATN89137.1 | MF919506_p41 | hypothetical protein | phrog_3472 | unknown function | unknown function | -1 | 34677 | 34931 |
| ATN89225.1 | MF919506_p129 | helix-turn-helix DNA binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 69444 | 69707 |
| ATN89181.1 | MF919506_p85 | dsDNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50994 | 52256 |
| ATN89103.1 | MF919506_p7 | hypothetical protein | phrog_18713 | unknown function | unknown function | -1 | 1551 | 1733 |
| ATN89239.1 | MF919506_p143 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 74272 | 74469 |
| ATN89227.1 | MF919506_p131 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 70211 | 70471 |
| ATN89201.1 | MF919506_p105 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 61677 | 61874 |
| ATN89164.1 | MF919506_p68 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 44055 | 44216 |
| ATN89205.1 | MF919506_p109 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62887 | 63177 |
| ATN89122.1 | MF919506_p26 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22312 | 24708 |
| ATN89099.1 | MF919506_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| ATN89171.1 | MF919506_p75 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 47457 | 47927 |
| ATN89192.1 | MF919506_p96 | helix-turn-helix DNA binding domain protein | phrog_1590 | unknown function | unknown function | 1 | 56549 | 57370 |
| ATN89186.1 | MF919506_p90 | holliday junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53249 | 53611 |
| ATN89187.1 | MF919506_p91 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 53608 | 53802 |
| ATN89102.1 | MF919506_p6 | hypothetical protein | phrog_4101 | unknown function | unknown function | -1 | 1309 | 1551 |
| ATN89204.1 | MF919506_p108 | helix-turn-helix DNA binding domain protein | phrog_1969 | unknown function | unknown function | 1 | 62523 | 62834 |
| ATN89130.1 | MF919506_p34 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31551 | 31889 |
| ATN89111.1 | MF919506_p15 | head-to-tail connector protein | phrog_1531 | head closure | connector | 1 | 9767 | 10102 |
| ATN89231.1 | MF919506_p135 | hypothetical protein | phrog_4006 | unknown function | unknown function | -1 | 71639 | 72199 |
| ATN89148.1 | MF919506_p52 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 37200 | 37346 |
| ATN89172.1 | MF919506_p76 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47927 | 48295 |
| ATN89170.1 | MF919506_p74 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 47146 | 47457 |
| ATN89114.1 | MF919506_p18 | major tail protein | phrog_476 | major tail protein | tail | 1 | 10888 | 11859 |
| ATN89215.1 | MF919506_p119 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 67274 | 67486 |
| ATN89158.1 | MF919506_p62 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 42419 | 42565 |
| ATN89180.1 | MF919506_p84 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 50666 | 51001 |
| ATN89182.1 | MF919506_p86 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52253 | 52441 |
| ATN89101.1 | MF919506_p5 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 776 | 1237 |
| ATN89229.1 | MF919506_p133 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 70833 | 71291 |
| ATN89120.1 | MF919506_p24 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19858 | 21453 |
| ATN89242.1 | MF919506_p146 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 75003 | 75350 |
| ATN89219.1 | MF919506_p123 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 68279 | 68479 |
| ATN89244.1 | MF919506_p148 | HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 75636 | 75983 |
| ATN89221.1 | MF919506_p125 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 68610 | 68789 |
| ATN89157.1 | MF919506_p61 | pentapeptide repeat protein | phrog_923 | unknown function | unknown function | 1 | 41572 | 42417 |
| ATN89243.1 | MF919506_p147 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 75425 | 75646 |
| ATN89166.1 | MF919506_p70 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44734 | 45063 |
| ATN89194.1 | MF919506_p98 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 57644 | 57802 |
| ATN89237.1 | MF919506_p141 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 73860 | 74033 |
| ATN89238.1 | MF919506_p142 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 74030 | 74266 |
| ATN89124.1 | MF919506_p28 | minor tail protein | phrog_553 | minor tail protein | tail | 1 | 27546 | 28508 |
| ATN89141.1 | MF919506_p45 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 35591 | 36025 |
| ATN89175.1 | MF919506_p79 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 48839 | 49072 |
| ATN89143.1 | MF919506_p47 | hypothetical protein | phrog_6127 | unknown function | unknown function | -1 | 36290 | 36403 |
| ATN89177.1 | MF919506_p81 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 49479 | 49796 |
| ATN89150.1 | MF919506_p54 | membrane domain protein | phrog_2847 | unknown function | unknown function | -1 | 38028 | 38330 |
| ATN89108.1 | MF919506_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7435 | 8928 |
| ATN89218.1 | MF919506_p122 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 68128 | 68295 |
| ATN89189.1 | MF919506_p93 | hypothetical protein | phrog_7164 | unknown function | unknown function | 1 | 54898 | 55095 |
| ATN89136.1 | MF919506_p40 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 34216 | 34680 |
| ATN89153.1 | MF919506_p57 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 39818 | 40591 |
| ATN89154.1 | MF919506_p58 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40686 | 41033 |
| ATN89191.1 | MF919506_p95 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 55187 | 56512 |
| ATN89135.1 | MF919506_p39 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34022 | 34213 |
| ATN89183.1 | MF919506_p87 | WhiB family transcription factor | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 52438 | 52698 |
| ATN89209.1 | MF919506_p113 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 64503 | 64982 |
| ATN89145.1 | MF919506_p49 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36573 | 36740 |
| ATN89196.1 | MF919506_p100 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 58244 | 58579 |
| ATN89169.1 | MF919506_p73 | ERF family ssDNA binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 46431 | 47153 |
| ATN89208.1 | MF919506_p112 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 64126 | 64500 |
| ATN89200.1 | MF919506_p104 | protease | phrog_94 | head maturation protease | head and packaging | 1 | 60869 | 61675 |
| ATN89232.1 | MF919506_p136 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 72189 | 72314 |
| ATN89142.1 | MF919506_p46 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 36022 | 36297 |
| ATN89134.1 | MF919506_p38 | DNA bridging protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 33588 | 33974 |
| ATN89217.1 | MF919506_p121 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 67718 | 68131 |
| ATN89188.1 | MF919506_p92 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 53957 | 54898 |
| ATN89197.1 | MF919506_p101 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58612 | 59118 |
| ATN89128.1 | MF919506_p32 | lysin A | phrog_317 | endolysin | lysis | 1 | 29669 | 31171 |
| ATN89160.1 | MF919506_p64 | hypothetical protein | phrog_4633 | unknown function | unknown function | 1 | 43149 | 43337 |
| ATN89222.1 | MF919506_p126 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 68789 | 68920 |
| ATN89131.1 | MF919506_p35 | lysin B | phrog_102 | endolysin | lysis | 1 | 31886 | 32743 |
| ATN89097.1 | MF919506_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 10 | 270 |
| ATN89179.1 | MF919506_p83 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 50019 | 50669 |
| ATN89207.1 | MF919506_p111 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 63852 | 64115 |
| ATN89195.1 | MF919506_p99 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 57799 | 58242 |
| ATN89176.1 | MF919506_p80 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 49069 | 49482 |
| ATN89193.1 | MF919506_p97 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 57367 | 57627 |
| ATN89210.1 | MF919506_p114 | DNA polymerase III subunit | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 64993 | 65778 |
| ATN89223.1 | MF919506_p127 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 68931 | 69065 |
| ATN89235.1 | MF919506_p139 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 73111 | 73497 |
| ATN89106.1 | MF919506_p10 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4787 | 6343 |
| ATN89161.1 | MF919506_p65 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 43384 | 43689 |
| ATN89168.1 | MF919506_p72 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 46025 | 46438 |
| ATN89174.1 | MF919506_p78 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 48663 | 48836 |
| ATN89105.1 | MF919506_p9 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4579 | 4800 |
| ATN89116.1 | MF919506_p19 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 11979 | 12853 |
| ATN89107.1 | MF919506_p11 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 6346 | 7347 |
| ATN89104.1 | MF919506_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1904 | 4567 |
| ATN89149.1 | MF919506_p53 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 37346 | 37741 |
| ATN89241.1 | MF919506_p145 | hypothetical protein | phrog_5130 | unknown function | unknown function | -1 | 74747 | 74938 |
| ATN89113.1 | MF919506_p17 | head-to-tail connector protein | phrog_813 | head-tail adaptor | connector | 1 | 10457 | 10861 |
| ATN89151.1 | MF919506_p55 | integrase | phrog_1 | integrase | integration and excision | 1 | 38581 | 39462 |
| ATN89206.1 | MF919506_p110 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 63631 | 63855 |
| ATN89139.1 | MF919506_p43 | hypothetical protein | phrog_3447 | unknown function | unknown function | -1 | 35107 | 35319 |
| ATN89228.1 | MF919506_p132 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 70468 | 70836 |
| ATN89198.1 | MF919506_p102 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 59115 | 60347 |
| ATN89109.1 | MF919506_p13 | head-to-tail connector protein | phrog_2796 | head-tail connector protein | connector | 1 | 8995 | 9186 |
| ATN89133.1 | MF919506_p37 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33163 | 33408 |
| ATN89165.1 | MF919506_p69 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 44405 | 44737 |
| ATN89240.1 | MF919506_p144 | hypothetical protein | phrog_5970 | unknown function | unknown function | -1 | 74487 | 74750 |
| ATN89110.1 | MF919506_p14 | head-to-tail connector protein | phrog_442 | head-tail adaptor | connector | 1 | 9186 | 9752 |
| ATN89146.1 | MF919506_p50 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36737 | 36907 |
| ATN89190.1 | MF919506_p94 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 55092 | 55190 |
| ATN89127.1 | MF919506_p31 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29311 | 29595 |
| ATN89100.1 | MF919506_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 783 |
| ATN89234.1 | MF919506_p138 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 72556 | 73107 |
| ATN89224.1 | MF919506_p128 | hypothetical protein | phrog_6448 | unknown function | unknown function | 1 | 69067 | 69180 |
| ATN89129.1 | MF919506_p33 | holin | phrog_526 | holin | lysis | 1 | 31175 | 31558 |