Genomic map of Gordonia phage Lysidious (MF919521)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF919521
Definition
Gordonia phage Lysidious, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
50948
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
83
%GC
67
Number of singletons
5
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATN90866.1 MF919521_p61 ssDNA binding protein phrog_4171 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 40833 41798
ATN90872.1 MF919521_p67 nucleotidyltransferase phrog_388 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 43158 43943
ATN90815.1 MF919521_p3 portal protein phrog_113 portal protein head and packaging 1 1940 3316
ATN90843.1 MF919521_p32 hypothetical protein phrog_35313 unknown function unknown function 1 26624 27886
ATN90840.1 MF919521_p29 minor tail protein phrog_737 minor tail protein tail 1 23907 25466
ATN90859.1 MF919521_p54 hypothetical protein phrog_9981 unknown function unknown function 1 37630 37818
ATN90837.1 MF919521_p26 lysin B phrog_102 endolysin lysis 1 21676 22476
ATN90862.1 MF919521_p57 hypothetical protein phrog_572 unknown function unknown function 1 38485 38838
ATN90842.1 MF919521_p31 minor tail protein phrog_25765 minor tail protein tail 1 25797 26621
ATN90858.1 MF919521_p53 hypothetical protein phrog_5984 unknown function unknown function 1 37295 37633
ATN90816.1 MF919521_p4 capsid maturation protease phrog_3894 head maturation protease head and packaging 1 3316 4728
ATN90875.1 MF919521_p70 hypothetical protein phrog_13233 unknown function unknown function 1 44544 44858
ATN90823.1 MF919521_p11 head-to-tail connector protein phrog_9658 head-tail connector protein connector 1 7587 7877
ATN90871.1 MF919521_p66 hypothetical protein phrog_10682 unknown function unknown function 1 42976 43161
ATN90893.1 MF919521_p38 integrase phrog_95 integrase integration and excision 1 30792 32183
ATN90818.1 MF919521_p6 major capsid protein phrog_1650 major head protein head and packaging 1 5209 6138
ATN90836.1 MF919521_p25 membrane protein phrog_10261 membrane protein moron, auxiliary metabolic gene and host takeover 1 21224 21682
ATN90855.1 MF919521_p50 hypothetical protein phrog_9909 unknown function unknown function 1 36410 36712
ATN90813.1 MF919521_p1 terminase small subunit phrog_1496 terminase small subunit head and packaging 1 56 397
ATN90838.1 MF919521_p27 hypothetical protein phrog_9406 unknown function unknown function 1 22473 22847
ATN90881.1 MF919521_p77 hypothetical protein phrog_13993 unknown function unknown function 1 47667 48149
ATN90869.1 MF919521_p64 hypothetical protein phrog_8336 unknown function unknown function 1 42296 42793
ATN90826.1 MF919521_p14 major tail protein phrog_117 major tail protein tail 1 8679 9317
ATN90848.1 MF919521_p41 hypothetical protein phrog_6288 unknown function unknown function -1 32868 33554
ATN90860.1 MF919521_p55 hypothetical protein phrog_1622 unknown function unknown function 1 37815 38129
ATN90850.1 MF919521_p44 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 34244 35065
ATN90854.1 MF919521_p48 hypothetical protein phrog_9588 unknown function unknown function 1 35755 36078
ATN90889.1 MF919521_p15 tail assembly chaperone phrog_8183 tail assembly chaperone tail 1 9420 10204
ATN90880.1 MF919521_p76 RuvC-like resolvase phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 47074 47670
ATN90874.1 MF919521_p69 hypothetical protein phrog_12575 unknown function unknown function 1 44155 44544
ATN90879.1 MF919521_p74 hypothetical protein phrog_2857 tail fiber protein tail 1 46396 46692
ATN90861.1 MF919521_p56 hypothetical protein phrog_6877 unknown function unknown function 1 38126 38485
ATN90827.1 MF919521_p16 tail assembly chaperone phrog_5010 tail assembly chaperone tail 1 9420 9830
ATN90877.1 MF919521_p72 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 45013 45621
ATN90878.1 MF919521_p73 hypothetical protein phrog_2447 replication initiation protein DNA, RNA and nucleotide metabolism 1 45614 46399
ATN90849.1 MF919521_p43 hypothetical protein phrog_15107 unknown function unknown function 1 34068 34247
ATN90876.1 MF919521_p71 hypothetical protein phrog_10260 unknown function unknown function 1 44855 45016
ATN90819.1 MF919521_p7 head-to-tail connector protein phrog_2322 head-tail connector protein connector 1 6142 6570
ATN90844.1 MF919521_p34 hypothetical protein singleton unknown function unknown function -1 28960 29118
ATN90834.1 MF919521_p23 membrane protein phrog_443 holin lysis 1 20458 20919
ATN90820.1 MF919521_p8 head-to-tail connector protein phrog_137 head-tail adaptor Ad1 connector 1 6567 6959
ATN90887.1 MF919521_p75 hypothetical protein phrog_16913 unknown function unknown function 1 46689 46979
ATN90853.1 MF919521_p47 hypothetical protein phrog_6554 unknown function unknown function 1 35576 35758
ATN90832.1 MF919521_p21 lysin A phrog_1512 endolysin lysis 1 18837 19544
ATN90833.1 MF919521_p22 lysin A phrog_3084 endolysin lysis 1 19544 20455
ATN90852.1 MF919521_p46 hypothetical protein phrog_8218 unknown function unknown function 1 35415 35579
ATN90883.1 MF919521_p79 hypothetical protein phrog_908 unknown function unknown function 1 48328 49104
ATN90835.1 MF919521_p24 membrane protein phrog_11800 membrane protein moron, auxiliary metabolic gene and host takeover 1 20983 21237
ATN90890.1 MF919521_p33 hypothetical protein phrog_38451 unknown function unknown function -1 27883 28860
ATN90857.1 MF919521_p52 helix-turn-helix DNA binding domain protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 36936 37298
ATN90865.1 MF919521_p60 HNH endonuclease phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40309 40836
ATN90867.1 MF919521_p62 hypothetical protein phrog_8105 unknown function unknown function 1 41795 42100
ATN90817.1 MF919521_p5 scaffolding protein phrog_673 head scaffolding protein head and packaging 1 4730 5182
ATN90845.1 MF919521_p35 hypothetical protein phrog_6153 unknown function unknown function -1 29201 29428
ATN90814.1 MF919521_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 360 1928
ATN90892.1 MF919521_p37 hypothetical protein phrog_12638 unknown function unknown function -1 29785 30657
ATN90846.1 MF919521_p39 hypothetical protein phrog_5316 unknown function unknown function -1 32185 32394
ATN90894.1 MF919521_p36 hypothetical protein singleton unknown function unknown function 1 29480 29557
ATN90830.1 MF919521_p19 minor tail protein phrog_106 minor tail protein tail 1 16311 17177
ATN90895.1 MF919521_p49 hypothetical protein phrog_9909 unknown function unknown function 1 36075 36413
ATN90873.1 MF919521_p68 hypothetical protein phrog_11360 unknown function unknown function 1 43940 44158
ATN90888.1 MF919521_p82 hypothetical protein phrog_8604 unknown function unknown function 1 49840 50364
ATN90885.1 MF919521_p81 hypothetical protein singleton unknown function unknown function 1 49295 49705
ATN90886.1 MF919521_p83 HNH endonuclease phrog_1808 HNH endonuclease DNA, RNA and nucleotide metabolism 1 50525 50887
ATN90864.1 MF919521_p59 exonuclease phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 39422 40312
ATN90856.1 MF919521_p51 hypothetical protein phrog_11014 unknown function unknown function 1 36709 36939
ATN90868.1 MF919521_p63 hypothetical protein phrog_12075 membrane protein moron, auxiliary metabolic gene and host takeover 1 42097 42312
ATN90828.1 MF919521_p17 HNH endonuclease phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 10274 10777
ATN90863.1 MF919521_p58 DNA polymerase III subunit phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 38835 39422
ATN90822.1 MF919521_p10 hypothetical protein phrog_16006 unknown function unknown function 1 7330 7590
ATN90884.1 MF919521_p80 hypothetical protein singleton unknown function unknown function 1 49101 49298
ATN90824.1 MF919521_p12 head-to-tail connector protein phrog_5837 head closure Hc1 connector 1 7870 8157
ATN90882.1 MF919521_p78 hypothetical protein phrog_12987 DNA binding protein DNA, RNA and nucleotide metabolism 1 48146 48331
ATN90870.1 MF919521_p65 hypothetical protein phrog_10784 membrane protein moron, auxiliary metabolic gene and host takeover 1 42797 42979
ATN90851.1 MF919521_p45 hypothetical protein phrog_17603 unknown function unknown function 1 35062 35319
ATN90831.1 MF919521_p20 minor tail protein phrog_110 minor tail protein tail 1 17174 18820
ATN90839.1 MF919521_p28 minor tail protein phrog_4120 minor tail protein tail 1 22840 23907
ATN90821.1 MF919521_p9 head-to-tail connector protein phrog_501 head closure Hc1 connector 1 6959 7321
ATN90891.1 MF919521_p42 helix-turn-helix DNA binding domain protein singleton unknown function unknown function 1 33790 34071
ATN90825.1 MF919521_p13 head-to-tail connector protein phrog_123 tail terminator connector 1 8154 8573
ATN90847.1 MF919521_p40 hypothetical protein phrog_87 metallo-protease other -1 32387 32794
ATN90829.1 MF919521_p18 tapemeasure protein phrog_4197 tail length tape measure protein tail 1 10777 16320
ATN90841.1 MF919521_p30 hypothetical protein phrog_8055 unknown function unknown function 1 25466 25804