functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
MF919521 |
Definition |
Gordonia phage Lysidious, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
50948 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
83 |
%GC |
67 |
Number of singletons |
5 |
Number of paralogs |
2 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
ATN90866.1 | MF919521_p61 | ssDNA binding protein | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40833 | 41798 |
ATN90872.1 | MF919521_p67 | nucleotidyltransferase | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 43158 | 43943 |
ATN90815.1 | MF919521_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 1940 | 3316 |
ATN90843.1 | MF919521_p32 | hypothetical protein | phrog_35313 | unknown function | unknown function | 1 | 26624 | 27886 |
ATN90840.1 | MF919521_p29 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 23907 | 25466 |
ATN90859.1 | MF919521_p54 | hypothetical protein | phrog_9981 | unknown function | unknown function | 1 | 37630 | 37818 |
ATN90837.1 | MF919521_p26 | lysin B | phrog_102 | endolysin | lysis | 1 | 21676 | 22476 |
ATN90862.1 | MF919521_p57 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 38485 | 38838 |
ATN90842.1 | MF919521_p31 | minor tail protein | phrog_25765 | minor tail protein | tail | 1 | 25797 | 26621 |
ATN90858.1 | MF919521_p53 | hypothetical protein | phrog_5984 | unknown function | unknown function | 1 | 37295 | 37633 |
ATN90816.1 | MF919521_p4 | capsid maturation protease | phrog_3894 | head maturation protease | head and packaging | 1 | 3316 | 4728 |
ATN90875.1 | MF919521_p70 | hypothetical protein | phrog_13233 | unknown function | unknown function | 1 | 44544 | 44858 |
ATN90823.1 | MF919521_p11 | head-to-tail connector protein | phrog_9658 | head-tail connector protein | connector | 1 | 7587 | 7877 |
ATN90871.1 | MF919521_p66 | hypothetical protein | phrog_10682 | unknown function | unknown function | 1 | 42976 | 43161 |
ATN90893.1 | MF919521_p38 | integrase | phrog_95 | integrase | integration and excision | 1 | 30792 | 32183 |
ATN90818.1 | MF919521_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5209 | 6138 |
ATN90836.1 | MF919521_p25 | membrane protein | phrog_10261 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 21224 | 21682 |
ATN90855.1 | MF919521_p50 | hypothetical protein | phrog_9909 | unknown function | unknown function | 1 | 36410 | 36712 |
ATN90813.1 | MF919521_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 56 | 397 |
ATN90838.1 | MF919521_p27 | hypothetical protein | phrog_9406 | unknown function | unknown function | 1 | 22473 | 22847 |
ATN90881.1 | MF919521_p77 | hypothetical protein | phrog_13993 | unknown function | unknown function | 1 | 47667 | 48149 |
ATN90869.1 | MF919521_p64 | hypothetical protein | phrog_8336 | unknown function | unknown function | 1 | 42296 | 42793 |
ATN90826.1 | MF919521_p14 | major tail protein | phrog_117 | major tail protein | tail | 1 | 8679 | 9317 |
ATN90848.1 | MF919521_p41 | hypothetical protein | phrog_6288 | unknown function | unknown function | -1 | 32868 | 33554 |
ATN90860.1 | MF919521_p55 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 37815 | 38129 |
ATN90850.1 | MF919521_p44 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 34244 | 35065 |
ATN90854.1 | MF919521_p48 | hypothetical protein | phrog_9588 | unknown function | unknown function | 1 | 35755 | 36078 |
ATN90889.1 | MF919521_p15 | tail assembly chaperone | phrog_8183 | tail assembly chaperone | tail | 1 | 9420 | 10204 |
ATN90880.1 | MF919521_p76 | RuvC-like resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47074 | 47670 |
ATN90874.1 | MF919521_p69 | hypothetical protein | phrog_12575 | unknown function | unknown function | 1 | 44155 | 44544 |
ATN90879.1 | MF919521_p74 | hypothetical protein | phrog_2857 | tail fiber protein | tail | 1 | 46396 | 46692 |
ATN90861.1 | MF919521_p56 | hypothetical protein | phrog_6877 | unknown function | unknown function | 1 | 38126 | 38485 |
ATN90827.1 | MF919521_p16 | tail assembly chaperone | phrog_5010 | tail assembly chaperone | tail | 1 | 9420 | 9830 |
ATN90877.1 | MF919521_p72 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45013 | 45621 |
ATN90878.1 | MF919521_p73 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 45614 | 46399 |
ATN90849.1 | MF919521_p43 | hypothetical protein | phrog_15107 | unknown function | unknown function | 1 | 34068 | 34247 |
ATN90876.1 | MF919521_p71 | hypothetical protein | phrog_10260 | unknown function | unknown function | 1 | 44855 | 45016 |
ATN90819.1 | MF919521_p7 | head-to-tail connector protein | phrog_2322 | head-tail connector protein | connector | 1 | 6142 | 6570 |
ATN90844.1 | MF919521_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28960 | 29118 |
ATN90834.1 | MF919521_p23 | membrane protein | phrog_443 | holin | lysis | 1 | 20458 | 20919 |
ATN90820.1 | MF919521_p8 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6567 | 6959 |
ATN90887.1 | MF919521_p75 | hypothetical protein | phrog_16913 | unknown function | unknown function | 1 | 46689 | 46979 |
ATN90853.1 | MF919521_p47 | hypothetical protein | phrog_6554 | unknown function | unknown function | 1 | 35576 | 35758 |
ATN90832.1 | MF919521_p21 | lysin A | phrog_1512 | endolysin | lysis | 1 | 18837 | 19544 |
ATN90833.1 | MF919521_p22 | lysin A | phrog_3084 | endolysin | lysis | 1 | 19544 | 20455 |
ATN90852.1 | MF919521_p46 | hypothetical protein | phrog_8218 | unknown function | unknown function | 1 | 35415 | 35579 |
ATN90883.1 | MF919521_p79 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 48328 | 49104 |
ATN90835.1 | MF919521_p24 | membrane protein | phrog_11800 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 20983 | 21237 |
ATN90890.1 | MF919521_p33 | hypothetical protein | phrog_38451 | unknown function | unknown function | -1 | 27883 | 28860 |
ATN90857.1 | MF919521_p52 | helix-turn-helix DNA binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36936 | 37298 |
ATN90865.1 | MF919521_p60 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40309 | 40836 |
ATN90867.1 | MF919521_p62 | hypothetical protein | phrog_8105 | unknown function | unknown function | 1 | 41795 | 42100 |
ATN90817.1 | MF919521_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4730 | 5182 |
ATN90845.1 | MF919521_p35 | hypothetical protein | phrog_6153 | unknown function | unknown function | -1 | 29201 | 29428 |
ATN90814.1 | MF919521_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 360 | 1928 |
ATN90892.1 | MF919521_p37 | hypothetical protein | phrog_12638 | unknown function | unknown function | -1 | 29785 | 30657 |
ATN90846.1 | MF919521_p39 | hypothetical protein | phrog_5316 | unknown function | unknown function | -1 | 32185 | 32394 |
ATN90894.1 | MF919521_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29480 | 29557 |
ATN90830.1 | MF919521_p19 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16311 | 17177 |
ATN90895.1 | MF919521_p49 | hypothetical protein | phrog_9909 | unknown function | unknown function | 1 | 36075 | 36413 |
ATN90873.1 | MF919521_p68 | hypothetical protein | phrog_11360 | unknown function | unknown function | 1 | 43940 | 44158 |
ATN90888.1 | MF919521_p82 | hypothetical protein | phrog_8604 | unknown function | unknown function | 1 | 49840 | 50364 |
ATN90885.1 | MF919521_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49295 | 49705 |
ATN90886.1 | MF919521_p83 | HNH endonuclease | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 50525 | 50887 |
ATN90864.1 | MF919521_p59 | exonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 39422 | 40312 |
ATN90856.1 | MF919521_p51 | hypothetical protein | phrog_11014 | unknown function | unknown function | 1 | 36709 | 36939 |
ATN90868.1 | MF919521_p63 | hypothetical protein | phrog_12075 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 42097 | 42312 |
ATN90828.1 | MF919521_p17 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10274 | 10777 |
ATN90863.1 | MF919521_p58 | DNA polymerase III subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 38835 | 39422 |
ATN90822.1 | MF919521_p10 | hypothetical protein | phrog_16006 | unknown function | unknown function | 1 | 7330 | 7590 |
ATN90884.1 | MF919521_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49101 | 49298 |
ATN90824.1 | MF919521_p12 | head-to-tail connector protein | phrog_5837 | head closure Hc1 | connector | 1 | 7870 | 8157 |
ATN90882.1 | MF919521_p78 | hypothetical protein | phrog_12987 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 48146 | 48331 |
ATN90870.1 | MF919521_p65 | hypothetical protein | phrog_10784 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 42797 | 42979 |
ATN90851.1 | MF919521_p45 | hypothetical protein | phrog_17603 | unknown function | unknown function | 1 | 35062 | 35319 |
ATN90831.1 | MF919521_p20 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17174 | 18820 |
ATN90839.1 | MF919521_p28 | minor tail protein | phrog_4120 | minor tail protein | tail | 1 | 22840 | 23907 |
ATN90821.1 | MF919521_p9 | head-to-tail connector protein | phrog_501 | head closure Hc1 | connector | 1 | 6959 | 7321 |
ATN90891.1 | MF919521_p42 | helix-turn-helix DNA binding domain protein | singleton | unknown function | unknown function | 1 | 33790 | 34071 |
ATN90825.1 | MF919521_p13 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 8154 | 8573 |
ATN90847.1 | MF919521_p40 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 32387 | 32794 |
ATN90829.1 | MF919521_p18 | tapemeasure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 10777 | 16320 |
ATN90841.1 | MF919521_p30 | hypothetical protein | phrog_8055 | unknown function | unknown function | 1 | 25466 | 25804 |