| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF919541 |
Definition |
Mycobacterium phage YassJohnny, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
NUCCORE |
Length |
73697 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
139 |
%GC |
62.88 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATN92575.1 | MF919541_p8 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1956 | 2267 |
| ATN92702.1 | MF919541_p135 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 71940 | 72176 |
| ATN92654.1 | MF919541_p87 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 53492 | 53590 |
| ATN92572.1 | MF919541_p5 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 783 | 1064 |
| ATN92634.1 | MF919541_p67 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 45585 | 45896 |
| ATN92620.1 | MF919541_p53 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 39881 | 40018 |
| ATN92596.1 | MF919541_p29 | minor tail protein | phrog_553 | minor tail protein | tail | 1 | 28033 | 28995 |
| ATN92582.1 | MF919541_p15 | head-to-tail connector protein | phrog_442 | head-tail adaptor | connector | 1 | 9678 | 10244 |
| ATN92632.1 | MF919541_p65 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 44464 | 44877 |
| ATN92672.1 | MF919541_p105 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 61756 | 62019 |
| ATN92585.1 | MF919541_p18 | head-to-tail connector protein | phrog_813 | head-tail adaptor | connector | 1 | 10947 | 11351 |
| ATN92627.1 | MF919541_p60 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 42261 | 42494 |
| ATN92699.1 | MF919541_p132 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 71012 | 71407 |
| ATN92614.1 | MF919541_p47 | membrane domain protein | phrog_2847 | unknown function | unknown function | -1 | 36471 | 36773 |
| ATN92626.1 | MF919541_p59 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 42146 | 42253 |
| ATN92705.1 | MF919541_p138 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 72905 | 73126 |
| ATN92653.1 | MF919541_p86 | hypothetical protein | phrog_7164 | unknown function | unknown function | 1 | 53298 | 53495 |
| ATN92673.1 | MF919541_p106 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 62030 | 62404 |
| ATN92623.1 | MF919541_p56 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 41005 | 41283 |
| ATN92590.1 | MF919541_p23 | tapemeasure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 13849 | 18582 |
| ATN92604.1 | MF919541_p37 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 33227 | 33643 |
| ATN92697.1 | MF919541_p130 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 70208 | 70414 |
| ATN92680.1 | MF919541_p113 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 65178 | 65390 |
| ATN92640.1 | MF919541_p73 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 47508 | 47921 |
| ATN92588.1 | MF919541_p20 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 12469 | 13343 |
| ATN92636.1 | MF919541_p69 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 46369 | 46737 |
| ATN92635.1 | MF919541_p68 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 45896 | 46369 |
| ATN92658.1 | MF919541_p91 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 56044 | 56202 |
| ATN92573.1 | MF919541_p6 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1057 | 1518 |
| ATN92668.1 | MF919541_p101 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 60132 | 60422 |
| ATN92633.1 | MF919541_p66 | ERF family ssDNA binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44870 | 45592 |
| ATN92676.1 | MF919541_p109 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 63679 | 63921 |
| ATN92692.1 | MF919541_p125 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 68372 | 68740 |
| ATN92662.1 | MF919541_p95 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 57147 | 57647 |
| ATN92605.1 | MF919541_p38 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33650 | 33895 |
| ATN92648.1 | MF919541_p81 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 51112 | 51333 |
| ATN92695.1 | MF919541_p128 | hypothetical protein | phrog_4006 | unknown function | unknown function | -1 | 69543 | 70088 |
| ATN92693.1 | MF919541_p126 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 68737 | 69195 |
| ATN92619.1 | MF919541_p52 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 39786 | 39884 |
| ATN92646.1 | MF919541_p79 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50692 | 50880 |
| ATN92644.1 | MF919541_p77 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 49090 | 49440 |
| ATN92690.1 | MF919541_p123 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 67607 | 67996 |
| ATN92657.1 | MF919541_p90 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 55767 | 56027 |
| ATN92660.1 | MF919541_p93 | hypothetical protein | phrog_7833 | unknown function | unknown function | 1 | 56655 | 56777 |
| ATN92664.1 | MF919541_p97 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58244 | 58684 |
| ATN92669.1 | MF919541_p102 | helix-turn-helix DNA binding domain protein | phrog_1969 | unknown function | unknown function | 1 | 60427 | 60738 |
| ATN92613.1 | MF919541_p46 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 35906 | 36211 |
| ATN92639.1 | MF919541_p72 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 47302 | 47511 |
| ATN92682.1 | MF919541_p115 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 65574 | 66035 |
| ATN92701.1 | MF919541_p134 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 71770 | 71943 |
| ATN92684.1 | MF919541_p117 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 66183 | 66383 |
| ATN92700.1 | MF919541_p133 | hypothetical protein | phrog_4496 | unknown function | unknown function | -1 | 71412 | 71765 |
| ATN92591.1 | MF919541_p24 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18612 | 20273 |
| ATN92600.1 | MF919541_p33 | lysin A | phrog_317 | endolysin | lysis | 1 | 30156 | 31658 |
| ATN92675.1 | MF919541_p108 | DNA polymerase III subunit | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 62897 | 63682 |
| ATN92643.1 | MF919541_p76 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 48458 | 49108 |
| ATN92641.1 | MF919541_p74 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 47918 | 48235 |
| ATN92603.1 | MF919541_p36 | lysin B | phrog_102 | endolysin | lysis | 1 | 32373 | 33230 |
| ATN92704.1 | MF919541_p137 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 72483 | 72830 |
| ATN92621.1 | MF919541_p54 | pentapeptide repeat protein | phrog_923 | unknown function | unknown function | 1 | 40015 | 40860 |
| ATN92608.1 | MF919541_p41 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 34739 | 34906 |
| ATN92576.1 | MF919541_p9 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2303 | 4966 |
| ATN92580.1 | MF919541_p13 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7927 | 9420 |
| ATN92685.1 | MF919541_p118 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 66380 | 66517 |
| ATN92574.1 | MF919541_p7 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 1538 | 1855 |
| ATN92667.1 | MF919541_p100 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 59775 | 60131 |
| ATN92606.1 | MF919541_p39 | DNA bridging protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 34092 | 34478 |
| ATN92624.1 | MF919541_p57 | hypothetical protein | phrog_4633 | unknown function | unknown function | 1 | 41592 | 41780 |
| ATN92691.1 | MF919541_p124 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 68115 | 68375 |
| ATN92645.1 | MF919541_p78 | dsDNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 49433 | 50695 |
| ATN92659.1 | MF919541_p92 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 56199 | 56651 |
| ATN92616.1 | MF919541_p49 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 38044 | 38283 |
| ATN92650.1 | MF919541_p83 | holliday junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 51649 | 52011 |
| ATN92671.1 | MF919541_p104 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 61535 | 61759 |
| ATN92578.1 | MF919541_p11 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 5183 | 6742 |
| ATN92601.1 | MF919541_p34 | holin | phrog_526 | holin | lysis | 1 | 31662 | 32045 |
| ATN92609.1 | MF919541_p42 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 34903 | 35073 |
| ATN92598.1 | MF919541_p31 | helix-turn-helix DNA binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29480 | 29665 |
| ATN92666.1 | MF919541_p99 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 59581 | 59778 |
| ATN92592.1 | MF919541_p25 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20345 | 21940 |
| ATN92595.1 | MF919541_p28 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25192 | 28032 |
| ATN92599.1 | MF919541_p32 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29798 | 30082 |
| ATN92607.1 | MF919541_p40 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 34611 | 34739 |
| ATN92696.1 | MF919541_p129 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 70093 | 70218 |
| ATN92637.1 | MF919541_p70 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 46740 | 47102 |
| ATN92570.1 | MF919541_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| ATN92686.1 | MF919541_p119 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 66514 | 66693 |
| ATN92625.1 | MF919541_p58 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 41827 | 42132 |
| ATN92584.1 | MF919541_p17 | head-to-tail connector protein | phrog_2805 | minor tail protein | tail | 1 | 10688 | 10969 |
| ATN92589.1 | MF919541_p22 | HNH endonuclease | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 13333 | 13848 |
| ATN92583.1 | MF919541_p16 | head-to-tail connector protein | phrog_1531 | head closure | connector | 1 | 10257 | 10592 |
| ATN92688.1 | MF919541_p121 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 66835 | 66969 |
| ATN92569.1 | MF919541_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| ATN92571.1 | MF919541_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 786 |
| ATN92674.1 | MF919541_p107 | hypothetical protein | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | 1 | 62407 | 62886 |
| ATN92568.1 | MF919541_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 34 | 270 |
| ATN92687.1 | MF919541_p120 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 66693 | 66824 |
| ATN92628.1 | MF919541_p61 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 42494 | 42655 |
| ATN92629.1 | MF919541_p62 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 42844 | 43176 |
| ATN92652.1 | MF919541_p85 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 52357 | 53298 |
| ATN92689.1 | MF919541_p122 | helix-turn-helix DNA binding domain protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 67347 | 67610 |
| ATN92597.1 | MF919541_p30 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 29065 | 29493 |
| ATN92651.1 | MF919541_p84 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 52008 | 52202 |
| ATN92681.1 | MF919541_p114 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 65371 | 65625 |
| ATN92677.1 | MF919541_p110 | DNA recombinase | phrog_97 | UvsX-like recombinase | other | 1 | 63929 | 64891 |
| ATN92638.1 | MF919541_p71 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 47102 | 47275 |
| ATN92683.1 | MF919541_p116 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 66032 | 66199 |
| ATN92698.1 | MF919541_p131 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 70460 | 70972 |
| ATN92602.1 | MF919541_p35 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 32038 | 32376 |
| ATN92678.1 | MF919541_p111 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 64888 | 65025 |
| ATN92579.1 | MF919541_p12 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 6745 | 7839 |
| ATN92661.1 | MF919541_p94 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 56779 | 57114 |
| ATN92656.1 | MF919541_p89 | helix-turn-helix DNA binding domain protein | phrog_1590 | unknown function | unknown function | 1 | 54949 | 55770 |
| ATN92647.1 | MF919541_p80 | WhiB family transcription factor | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 50862 | 51137 |
| ATN92622.1 | MF919541_p55 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 40862 | 41008 |
| ATN92694.1 | MF919541_p127 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 69209 | 69538 |
| ATN92594.1 | MF919541_p27 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22799 | 25195 |
| ATN92612.1 | MF919541_p45 | hypothetical protein | phrog_17862 | unknown function | unknown function | -1 | 35544 | 35909 |
| ATN92617.1 | MF919541_p50 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 38261 | 39010 |
| ATN92587.1 | MF919541_p21 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 12469 | 12930 |
| ATN92615.1 | MF919541_p48 | integrase | phrog_1 | integrase | integration and excision | 1 | 37024 | 37905 |
| ATN92655.1 | MF919541_p88 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 53587 | 54912 |
| ATN92663.1 | MF919541_p96 | DNA methylase | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 57688 | 58251 |
| ATN92706.1 | MF919541_p139 | hypothetical protein | phrog_8627 | unknown function | unknown function | 1 | 73171 | 73584 |
| ATN92577.1 | MF919541_p10 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4978 | 5199 |
| ATN92581.1 | MF919541_p14 | head-to-tail connector protein | phrog_2796 | head-tail connector protein | connector | 1 | 9487 | 9678 |
| ATN92618.1 | MF919541_p51 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 39129 | 39476 |
| ATN92670.1 | MF919541_p103 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 60791 | 61081 |
| ATN92649.1 | MF919541_p82 | hypothetical protein | phrog_9963 | unknown function | unknown function | 1 | 51326 | 51652 |
| ATN92703.1 | MF919541_p136 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 72182 | 72379 |
| ATN92631.1 | MF919541_p64 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43499 | 44467 |
| ATN92665.1 | MF919541_p98 | protease | phrog_94 | head maturation protease | head and packaging | 1 | 58773 | 59579 |
| ATN92611.1 | MF919541_p44 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 35366 | 35512 |
| ATN92593.1 | MF919541_p26 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21949 | 22782 |
| ATN92679.1 | MF919541_p112 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 65012 | 65185 |
| ATN92586.1 | MF919541_p19 | major tail protein | phrog_476 | major tail protein | tail | 1 | 11378 | 12349 |
| ATN92642.1 | MF919541_p75 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 48225 | 48461 |
| ATN92610.1 | MF919541_p43 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 35132 | 35347 |
| ATN92630.1 | MF919541_p63 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 43173 | 43502 |