Genomic map of Gordonia phage Patio (MF919542)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF919542
Definition
Gordonia phage Patio, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
66251
Host Name
Gordonia terrae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
90
%GC
65.55
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATS93120.1 MF919542_p38 major tail protein phrog_476 major tail protein tail 1 22247 22930
ATS93160.1 MF919542_p79 hypothetical protein phrog_14599 unknown function unknown function -1 57992 58456
ATS93164.1 MF919542_p83 hypothetical protein phrog_15177 unknown function unknown function 1 60834 61592
ATS93129.1 MF919542_p47 hypothetical protein phrog_8373 unknown function unknown function 1 36027 36194
ATS93097.1 MF919542_p15 hypothetical protein singleton unknown function unknown function 1 8001 8207
ATS93105.1 MF919542_p23 major tail protein phrog_21562 tail protein tail 1 10898 11872
ATS93159.1 MF919542_p78 hypothetical protein phrog_5392 unknown function unknown function -1 57620 57925
ATS93163.1 MF919542_p82 hypothetical protein phrog_13959 unknown function unknown function 1 60406 60807
ATS93144.1 MF919542_p63 hypothetical protein phrog_38750 unknown function unknown function -1 48881 49177
ATS93088.1 MF919542_p6 hypothetical protein phrog_20759 unknown function unknown function 1 4770 4994
ATS93151.1 MF919542_p70 hypothetical protein phrog_13499 unknown function unknown function -1 53337 53678
ATS93148.1 MF919542_p67 AAA-ATPase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 50982 51761
ATS93166.1 MF919542_p85 hypothetical protein phrog_18547 unknown function unknown function 1 62788 63357
ATS93131.1 MF919542_p49 hypothetical protein phrog_6030 unknown function unknown function 1 37235 37534
ATS93156.1 MF919542_p75 hypothetical protein phrog_10718 unknown function unknown function -1 57119 57280
ATS93154.1 MF919542_p73 hypothetical protein phrog_17100 unknown function unknown function -1 54260 54601
ATS93114.1 MF919542_p32 major capsid protein phrog_29 major head protein head and packaging 1 18936 19997
ATS93142.1 MF919542_p61 resolvase phrog_1981 unknown function unknown function -1 44833 45570
ATS93133.1 MF919542_p51 lysin A phrog_6007 endolysin lysis 1 37940 38572
ATS93143.1 MF919542_p62 DNA polymerase III alpha subunit phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 45567 48881
ATS93162.1 MF919542_p81 hypothetical protein phrog_12365 unknown function unknown function 1 59924 60406
ATS93155.1 MF919542_p74 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 54598 56655
ATS93084.1 MF919542_p2 terminase small subunit phrog_226 minor tail protein tail 1 777 1343
ATS93152.1 MF919542_p71 hypothetical protein phrog_14384 unknown function unknown function -1 53716 53892
ATS93132.1 MF919542_p50 hypothetical protein phrog_240 head protein head and packaging 1 37538 37882
ATS93118.1 MF919542_p36 head-to-tail connector protein phrog_12236 head-tail connector protein connector 1 21351 21704
ATS93090.1 MF919542_p8 hypothetical protein phrog_14019 unknown function unknown function 1 5240 5869
ATS93124.1 MF919542_p42 tapemeasure protein phrog_6090 tail length tape measure protein tail 1 24346 29772
ATS93091.1 MF919542_p9 hypothetical protein phrog_25654 unknown function unknown function 1 5866 6231
ATS93103.1 MF919542_p21 lysin B phrog_102 endolysin lysis 1 9753 10526
ATS93147.1 MF919542_p66 hypothetical protein phrog_13965 unknown function unknown function -1 50075 50962
ATS93104.1 MF919542_p22 hypothetical protein phrog_6439 unknown function unknown function 1 10635 10898
ATS93122.1 MF919542_p41 tail assembly chaperone phrog_8963 tail assembly chaperone tail 1 23447 23761
ATS93158.1 MF919542_p77 hypothetical protein phrog_14499 membrane protein moron, auxiliary metabolic gene and host takeover -1 57498 57623
ATS93145.1 MF919542_p64 hypothetical protein phrog_7933 unknown function unknown function -1 49249 49476
ATS93093.1 MF919542_p11 hypothetical protein singleton unknown function unknown function 1 6581 7021
ATS93128.1 MF919542_p46 minor tail protein phrog_746 minor tail protein tail 1 33460 36018
ATS93169.1 MF919542_p88 hypothetical protein singleton unknown function unknown function 1 64087 64383
ATS93117.1 MF919542_p35 head-to-tail connector protein phrog_12740 head closure Hc1 connector 1 20963 21361
ATS93140.1 MF919542_p59 hypothetical protein phrog_13050 unknown function unknown function -1 44085 44357
ATS93168.1 MF919542_p87 hypothetical protein phrog_20867 unknown function unknown function 1 63521 64090
ATS93109.1 MF919542_p27 terminase large subunit phrog_9 terminase large subunit head and packaging 1 13048 14727
ATS93141.1 MF919542_p60 HTH DNA binding domain protein phrog_1729 unknown function unknown function -1 44354 44812
ATS93172.1 MF919542_p58 WhiB family transcription factor phrog_18034 transcriptional regulator WhiB-like transcription regulation -1 43669 44088
ATS93127.1 MF919542_p45 minor tail protein phrog_4120 minor tail protein tail 1 32349 33458
ATS93083.1 MF919542_p1 HNH endonuclease phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 545 796
ATS93108.1 MF919542_p26 HNH endonuclease phrog_7785 HNH endonuclease DNA, RNA and nucleotide metabolism 1 12536 12967
ATS93138.1 MF919542_p56 DNA primase/polymerase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism -1 40810 43371
ATS93161.1 MF919542_p80 hypothetical protein phrog_12059 unknown function unknown function -1 58460 59422
ATS93085.1 MF919542_p3 hypothetical protein phrog_14603 unknown function unknown function 1 2025 2432
ATS93092.1 MF919542_p10 hypothetical protein phrog_28946 unknown function unknown function 1 6228 6584
ATS93136.1 MF919542_p54 hypothetical protein phrog_1298 minor tail protein tail 1 39910 40416
ATS93126.1 MF919542_p44 minor tail protein phrog_110 minor tail protein tail 1 30694 32316
ATS93111.1 MF919542_p29 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 16350 17777
ATS93087.1 MF919542_p5 hypothetical protein singleton unknown function unknown function 1 4447 4773
ATS93165.1 MF919542_p84 hypothetical protein phrog_16405 membrane protein moron, auxiliary metabolic gene and host takeover 1 61626 62291
ATS93137.1 MF919542_p55 hypothetical protein phrog_726 unknown function unknown function 1 40391 40819
ATS93086.1 MF919542_p4 hypothetical protein phrog_25331 unknown function unknown function 1 2429 4447
ATS93112.1 MF919542_p30 scaffolding protein phrog_12880 head scaffolding protein head and packaging 1 17774 18460
ATS93094.1 MF919542_p12 HicA-like toxin phrog_2089 unknown function unknown function 1 7018 7272
ATS93125.1 MF919542_p43 minor tail protein phrog_106 minor tail protein tail 1 29772 30689
ATS93119.1 MF919542_p37 head-to-tail connector protein phrog_123 tail terminator connector 1 21701 22216
ATS93110.1 MF919542_p28 portal protein phrog_104 portal protein head and packaging 1 14770 16353
ATS93135.1 MF919542_p53 holin phrog_3428 holin lysis 1 39591 39905
ATS93095.1 MF919542_p13 hypothetical protein phrog_13327 unknown function unknown function 1 7272 7619
ATS93167.1 MF919542_p86 hypothetical protein phrog_15206 unknown function unknown function 1 63354 63524
ATS93139.1 MF919542_p57 hypothetical protein phrog_14298 unknown function unknown function -1 43368 43778
ATS93116.1 MF919542_p34 head-to-tail connector protein phrog_137 head-tail adaptor Ad1 connector 1 20508 20966
ATS93153.1 MF919542_p72 hypothetical protein phrog_3848 unknown function unknown function -1 53889 54263
ATS93102.1 MF919542_p20 hypothetical protein phrog_14439 unknown function unknown function 1 9526 9753
ATS93101.1 MF919542_p19 hypothetical protein phrog_16183 unknown function unknown function 1 9192 9557
ATS93099.1 MF919542_p17 hypothetical protein phrog_13444 unknown function unknown function 1 8513 8926
ATS93134.1 MF919542_p52 lysin A phrog_9506 endolysin lysis 1 38572 39594
ATS93113.1 MF919542_p31 capsid decoration protein phrog_3583 head decoration head and packaging 1 18476 18895
ATS93150.1 MF919542_p69 hypothetical protein phrog_17235 unknown function unknown function -1 52997 53344
ATS93130.1 MF919542_p48 hypothetical protein phrog_416 minor tail protein tail 1 36198 37259
ATS93106.1 MF919542_p24 hypothetical protein phrog_13218 unknown function unknown function 1 11893 12075
ATS93170.1 MF919542_p89 hypothetical protein singleton unknown function unknown function 1 64517 65056
ATS93100.1 MF919542_p18 hypothetical protein phrog_13455 unknown function unknown function 1 8923 9186
ATS93115.1 MF919542_p33 head-to-tail connector protein phrog_6587 head-tail connector protein connector 1 19999 20463
ATS93096.1 MF919542_p14 hypothetical protein phrog_16947 unknown function unknown function 1 7616 7945
ATS93171.1 MF919542_p90 hypothetical protein phrog_20357 unknown function unknown function 1 65185 65298
ATS93123.1 MF919542_p40 tail assembly chaperone phrog_2624 tail assembly chaperone tail 1 23447 24258
ATS93149.1 MF919542_p68 nuclease phrog_1218 exonuclease DNA, RNA and nucleotide metabolism -1 51817 53007
ATS93146.1 MF919542_p65 hypothetical protein phrog_13496 thioredoxin domain DNA, RNA and nucleotide metabolism -1 49473 50000
ATS93157.1 MF919542_p76 hypothetical protein phrog_19886 unknown function unknown function -1 57316 57501
ATS93089.1 MF919542_p7 hypothetical protein phrog_1374 unknown function unknown function 1 5032 5262
ATS93121.1 MF919542_p39 hypothetical protein phrog_14117 virion structural protein head and packaging 1 23016 23423
ATS93107.1 MF919542_p25 hypothetical protein phrog_18398 unknown function unknown function 1 12072 12539
ATS93098.1 MF919542_p16 hypothetical protein phrog_12539 unknown function unknown function 1 8204 8506