Genomic map of Pseudomonas phage YS35 (MF974178)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF974178
Definition
Pseudomonas phage YS35, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Pakpunavirus; unclassified Pakpunavirus.
DB of origin
NUCCORE
Length
93296
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
172
%GC
49.35
Number of singletons
4
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATI15995.1 MF974178_p22 hypothetical protein phrog_5336 unknown function unknown function -1 8570 8908
ATI16137.1 MF974178_p164 hypothetical protein phrog_2614 unknown function unknown function 1 89357 89719
ATI16007.1 MF974178_p34 hypothetical protein phrog_6266 unknown function unknown function -1 13539 14525
ATI16065.1 MF974178_p92 hypothetical protein phrog_4172 unknown function unknown function -1 43499 43804
ATI16036.1 MF974178_p63 hypothetical protein phrog_6983 unknown function unknown function -1 27463 27684
ATI16078.1 MF974178_p105 hypothetical protein phrog_349 virion structural protein head and packaging -1 53879 54235
ATI16033.1 MF974178_p60 hypothetical protein phrog_5822 unknown function unknown function -1 25425 25811
ATI16008.1 MF974178_p35 hypothetical protein phrog_6076 unknown function unknown function -1 14692 14892
ATI16024.1 MF974178_p51 hypothetical protein phrog_7063 3'-phosphatase, 5'-polynucleotide kinase other -1 21908 22858
ATI15976.1 MF974178_p2 hypothetical protein phrog_4955 unknown function unknown function -1 1612 1872
ATI16058.1 MF974178_p85 hypothetical protein phrog_4794 unknown function unknown function 1 40105 40338
ATI15983.1 MF974178_p10 hypothetical protein phrog_5680 unknown function unknown function -1 4101 4670
ATI16026.1 MF974178_p53 hypothetical protein phrog_6971 unknown function unknown function -1 23067 23402
ATI15980.1 MF974178_p7 hypothetical protein phrog_7753 unknown function unknown function -1 3112 3564
ATI16055.1 MF974178_p82 hypothetical protein phrog_2834 unknown function unknown function -1 38691 38945
ATI16117.1 MF974178_p144 metal dependent phosphohydrolase HD region phrog_990 metal-dependent phosphohydrolase other 1 79457 80017
ATI16028.1 MF974178_p55 hypothetical protein phrog_7135 unknown function unknown function -1 23642 23824
ATI16141.1 MF974178_p168 hypothetical protein phrog_15763 unknown function unknown function 1 91004 91408
ATI16056.1 MF974178_p83 hypothetical protein phrog_3754 unknown function unknown function -1 38979 39464
ATI16054.1 MF974178_p81 hypothetical protein phrog_4256 unknown function unknown function -1 38300 38668
ATI16020.1 MF974178_p47 ribonucleotide-diphosphate reductase beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 19327 20373
ATI16111.1 MF974178_p138 hypothetical protein phrog_2251 unknown function unknown function 1 76285 76497
ATI16102.1 MF974178_p129 hypothetical protein phrog_5067 unknown function unknown function 1 73417 73773
ATI16066.1 MF974178_p93 hypothetical protein phrog_4349 Rz-like spanin lysis -1 43936 44379
ATI15982.1 MF974178_p9 hypothetical protein phrog_6605 unknown function unknown function -1 3820 4032
ATI16027.1 MF974178_p54 hypothetical protein phrog_6873 unknown function unknown function -1 23421 23630
ATI16001.1 MF974178_p28 hypothetical protein phrog_5289 unknown function unknown function -1 11007 11255
ATI16129.1 MF974178_p156 hypothetical protein phrog_335 phosphatase other 1 86321 86800
ATI16053.1 MF974178_p80 hypothetical protein phrog_7101 unknown function unknown function -1 37638 38303
ATI16103.1 MF974178_p130 protease subunit phrog_1827 ATP-dependent protease other 1 73821 74369
ATI15979.1 MF974178_p6 hypothetical protein phrog_3968 unknown function unknown function -1 2867 3028
ATI16060.1 MF974178_p87 hypothetical protein phrog_7461 unknown function unknown function 1 41509 41664
ATI16043.1 MF974178_p70 endonuclease VII phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism -1 31338 31817
ATI16051.1 MF974178_p78 hypothetical protein phrog_4991 unknown function unknown function -1 37182 37484
ATI16002.1 MF974178_p29 hypothetical protein phrog_6871 unknown function unknown function -1 11252 11539
ATI16123.1 MF974178_p150 RNA ligase/tail attachment protein phrog_562 RNA ligase and tail fiber protein attachment catalyst tail 1 81935 82852
ATI16061.1 MF974178_p88 hypothetical protein phrog_6945 unknown function unknown function 1 41657 42466
ATI16004.1 MF974178_p31 hypothetical protein phrog_5201 unknown function unknown function -1 11696 11962
ATI15999.1 MF974178_p26 hypothetical protein phrog_2267 unknown function unknown function -1 10500 10808
ATI16099.1 MF974178_p126 hypothetical protein phrog_3900 unknown function unknown function -1 71825 72148
ATI16052.1 MF974178_p79 hypothetical protein phrog_6917 unknown function unknown function -1 37487 37651
ATI16142.1 MF974178_p169 hypothetical protein phrog_6773 unknown function unknown function 1 91405 91821
ATI16064.1 MF974178_p91 hypothetical protein phrog_3899 unknown function unknown function -1 43149 43463
ATI16018.1 MF974178_p45 hypothetical protein phrog_5604 unknown function unknown function -1 17368 17514
ATI16062.1 MF974178_p89 hypothetical protein phrog_7083 unknown function unknown function 1 42468 42788
ATI16126.1 MF974178_p153 hypothetical protein phrog_7663 unknown function unknown function 1 84152 84370
ATI16100.1 MF974178_p127 hypothetical protein singleton unknown function unknown function 1 72288 72503
ATI16031.1 MF974178_p58 hypothetical protein phrog_7013 unknown function unknown function -1 24764 25201
ATI16132.1 MF974178_p159 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism 1 87277 87858
ATI16075.1 MF974178_p102 hypothetical protein phrog_120 baseplate wedge subunit tail -1 51846 52145
ATI16125.1 MF974178_p152 phosphoribosylpyrophosphate synthetase phrog_619 ribose-phosphate pyrophosphokinase other 1 83289 84155
ATI16092.1 MF974178_p119 hypothetical protein phrog_49 head decoration head and packaging -1 63911 64321
ATI16097.1 MF974178_p124 hypothetical protein singleton unknown function unknown function -1 70375 70464
ATI16128.1 MF974178_p155 hypothetical protein phrog_6997 unknown function unknown function 1 86193 86324
ATI15994.1 MF974178_p21 hypothetical protein phrog_7542 unknown function unknown function -1 8217 8570
ATI16037.1 MF974178_p64 hypothetical protein singleton unknown function unknown function -1 27694 27828
ATI16022.1 MF974178_p49 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 20736 21701
ATI16005.1 MF974178_p32 hypothetical protein phrog_3768 unknown function unknown function -1 12038 12514
ATI15998.1 MF974178_p25 hypothetical protein phrog_4323 unknown function unknown function -1 10280 10426
ATI16114.1 MF974178_p141 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 77148 78356
ATI16029.1 MF974178_p56 hypothetical protein phrog_221 metallo-phosphoesterase other -1 23821 24600
ATI16038.1 MF974178_p65 hypothetical protein phrog_2544 unknown function unknown function -1 27995 28999
ATI16073.1 MF974178_p100 hypothetical protein phrog_587 structural protein head and packaging -1 49631 50362
ATI16046.1 MF974178_p73 hypothetical protein phrog_7863 unknown function unknown function -1 35898 36083
ATI16013.1 MF974178_p40 hypothetical protein phrog_7233 unknown function unknown function -1 16186 16371
ATI16108.1 MF974178_p135 hypothetical protein phrog_6991 unknown function unknown function 1 75401 75679
ATI16030.1 MF974178_p57 hypothetical protein phrog_4305 unknown function unknown function -1 24597 24767
ATI16138.1 MF974178_p165 hypothetical protein phrog_7430 unknown function unknown function 1 89719 90030
ATI16101.1 MF974178_p128 hypothetical protein phrog_5019 unknown function unknown function 1 72953 73420
ATI15997.1 MF974178_p24 hypothetical protein phrog_7133 unknown function unknown function -1 9660 10043
ATI16010.1 MF974178_p37 hypothetical protein phrog_6846 unknown function unknown function -1 15196 15390
ATI16139.1 MF974178_p166 hypothetical protein phrog_7742 unknown function unknown function 1 90018 90296
ATI16084.1 MF974178_p111 hypothetical protein phrog_280 virion structural protein head and packaging -1 58486 58959
ATI16088.1 MF974178_p115 hypothetical protein phrog_939 head protein head and packaging -1 61475 61855
ATI16032.1 MF974178_p59 hypothetical protein phrog_7621 unknown function unknown function -1 25198 25428
ATI16063.1 MF974178_p90 hypothetical protein phrog_2827 unknown function unknown function 1 42800 43111
ATI16090.1 MF974178_p117 hypothetical protein phrog_1732 unknown function unknown function -1 62306 62782
ATI16096.1 MF974178_p123 terminase large subunit phrog_979 terminase large subunit head and packaging -1 67195 68715
ATI16087.1 MF974178_p114 hypothetical protein phrog_4087 unknown function unknown function -1 60915 61478
ATI16133.1 MF974178_p160 hypothetical protein phrog_6932 unknown function unknown function 1 87878 88255
ATI15974.1 MF974178_p3 hypothetical protein phrog_24952 unknown function unknown function 1 1921 2067
ATI16045.1 MF974178_p72 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism -1 33982 35844
ATI16081.1 MF974178_p108 hypothetical protein phrog_4625 unknown function unknown function -1 57362 57514
ATI16091.1 MF974178_p118 major head capsid protein phrog_29 major head protein head and packaging -1 62833 63867
ATI16110.1 MF974178_p137 hypothetical protein phrog_5276 unknown function unknown function 1 76019 76288
ATI16021.1 MF974178_p48 hypothetical protein phrog_3506 thymidylate synthase DNA, RNA and nucleotide metabolism -1 20390 20770
ATI16098.1 MF974178_p125 HNH endonuclease phrog_2255 HNH endonuclease DNA, RNA and nucleotide metabolism -1 70983 71408
ATI16119.1 MF974178_p146 phosphoesterase domain containing protein phrog_547 phosphoesterase other 1 80438 81004
ATI16035.1 MF974178_p62 exodeoxyribonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 26368 27420
ATI16015.1 MF974178_p42 hypothetical protein phrog_7088 unknown function unknown function -1 16675 16911
ATI16131.1 MF974178_p158 hypothetical protein phrog_8023 unknown function unknown function 1 86963 87280
ATI16120.1 MF974178_p147 hypothetical protein phrog_5447 unknown function unknown function 1 80985 81242
ATI16034.1 MF974178_p61 hypothetical protein phrog_1985 HNH endonuclease DNA, RNA and nucleotide metabolism -1 25808 26371
ATI16059.1 MF974178_p86 hypothetical protein phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 40370 41506
ATI16006.1 MF974178_p33 hypothetical protein phrog_8175 unknown function unknown function -1 13143 13316
ATI15996.1 MF974178_p23 hypothetical protein phrog_2554 unknown function unknown function -1 8913 9584
ATI16144.1 MF974178_p171 hypothetical protein phrog_7340 unknown function unknown function 1 92214 92480
ATI16109.1 MF974178_p136 hypothetical protein phrog_3948 unknown function unknown function 1 75693 76010
ATI15975.1 MF974178_p1 hypothetical protein phrog_953 HNH endonuclease DNA, RNA and nucleotide metabolism -1 229 831
ATI16050.1 MF974178_p77 hypothetical protein phrog_7141 unknown function unknown function -1 36759 37181
ATI16069.1 MF974178_p96 tail fiber protein phrog_2282 tail fiber protein tail -1 45200 46699
ATI16048.1 MF974178_p75 hypothetical protein phrog_7814 unknown function unknown function -1 36335 36526
ATI16086.1 MF974178_p113 hypothetical protein phrog_205 tail sheath tail -1 59616 60902
ATI16016.1 MF974178_p43 hypothetical protein phrog_6898 unknown function unknown function -1 16911 17144
ATI15978.1 MF974178_p5 hypothetical protein phrog_5746 unknown function unknown function -1 2580 2870
ATI16025.1 MF974178_p52 hypothetical protein phrog_7016 unknown function unknown function -1 22851 23063
ATI16019.1 MF974178_p46 ribonucleoside-diphosphate reductase alpha chain phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 17589 19334
ATI16094.1 MF974178_p121 methyltransferase phrog_1530 DNA methyltransferase other -1 65263 65733
ATI16145.1 MF974178_p172 hypothetical protein phrog_8631 unknown function unknown function -1 92534 92692
ATI16140.1 MF974178_p167 hypothetical protein phrog_7453 unknown function unknown function 1 90299 90961
ATI16049.1 MF974178_p76 hypothetical protein phrog_6310 unknown function unknown function -1 36513 36641
ATI16057.1 MF974178_p84 hypothetical protein phrog_6163 unknown function unknown function -1 39467 39664
ATI16143.1 MF974178_p170 hypothetical protein phrog_7262 unknown function unknown function 1 91811 92221
ATI16127.1 MF974178_p154 nicotinamide phosphoribosyltransferase family protein phrog_448 nicotinamide phosphoribosyl transferase other 1 84427 86115
ATI16082.1 MF974178_p109 structural protein phrog_1613 tail assembly chaperone tail -1 57622 57993
ATI16072.1 MF974178_p99 tail fiber protein phrog_2282 tail fiber protein tail -1 47605 49620
ATI16107.1 MF974178_p134 hypothetical protein phrog_7048 unknown function unknown function 1 75126 75404
ATI16003.1 MF974178_p30 hypothetical protein phrog_6353 unknown function unknown function -1 11539 11682
ATI16113.1 MF974178_p140 CMP/dCMP deaminase, zinc-binding phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 76735 77151
ATI16023.1 MF974178_p50 hypothetical protein phrog_9669 unknown function unknown function -1 21756 21848
ATI16076.1 MF974178_p103 baseplate protein phrog_11 baseplate spike tail -1 52228 52968
ATI16042.1 MF974178_p69 hypothetical protein phrog_16667 DNA polymerase I DNA, RNA and nucleotide metabolism -1 30497 31186
ATI15984.1 MF974178_p11 hypothetical protein phrog_4273 unknown function unknown function -1 4707 5222
ATI16079.1 MF974178_p106 hypothetical protein phrog_817 tail fiber protein tail -1 54241 55002
ATI16067.1 MF974178_p94 hypothetical protein phrog_5847 holin lysis -1 44366 44605
ATI16070.1 MF974178_p97 hypothetical protein singleton unknown function unknown function -1 46711 47187
ATI15992.1 MF974178_p19 hypothetical protein phrog_6818 unknown function unknown function -1 7738 7932
ATI16068.1 MF974178_p95 hypothetical protein phrog_2860 endolysin head and packaging -1 44623 45183
ATI16011.1 MF974178_p38 hypothetical protein phrog_6974 unknown function unknown function -1 15400 15885
ATI16104.1 MF974178_p131 hypothetical protein phrog_6961 unknown function unknown function 1 74430 74615
ATI16130.1 MF974178_p157 hypothetical protein phrog_6391 unknown function unknown function 1 86812 86961
ATI16041.1 MF974178_p68 hypothetical protein phrog_3878 unknown function unknown function -1 30009 30407
ATI16077.1 MF974178_p104 hypothetical protein phrog_196 baseplate hub tail -1 52965 53882
ATI15985.1 MF974178_p12 hypothetical protein phrog_1106 unknown function unknown function -1 5306 5785
ATI16083.1 MF974178_p110 structural protein phrog_280 virion structural protein head and packaging -1 58007 58486
ATI15990.1 MF974178_p17 hypothetical protein phrog_6913 unknown function unknown function -1 7205 7429
ATI16044.1 MF974178_p71 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 31921 33921
ATI16136.1 MF974178_p163 hypothetical protein phrog_7178 unknown function unknown function 1 89085 89300
ATI16039.1 MF974178_p66 hypothetical protein phrog_6824 unknown function unknown function -1 29101 29811
ATI16124.1 MF974178_p151 hypothetical protein phrog_2071 ATPase other 1 82863 83279
ATI16009.1 MF974178_p36 hypothetical protein phrog_5041 unknown function unknown function -1 14955 15194
ATI16118.1 MF974178_p145 hypothetical protein phrog_6781 unknown function unknown function 1 80007 80438
ATI15981.1 MF974178_p8 hypothetical protein phrog_6876 unknown function unknown function -1 3620 3790
ATI16047.1 MF974178_p74 hypothetical protein phrog_6115 unknown function unknown function -1 36080 36325
ATI15989.1 MF974178_p16 hypothetical protein phrog_4025 unknown function unknown function -1 6906 7172
ATI16116.1 MF974178_p143 cell wall hydrolase phrog_938 endolysin lysis 1 78895 79455
ATI16014.1 MF974178_p41 hypothetical protein phrog_9028 unknown function unknown function -1 16361 16675
ATI15988.1 MF974178_p15 hypothetical protein phrog_6935 unknown function unknown function -1 6517 6909
ATI16135.1 MF974178_p162 hypothetical protein phrog_6967 unknown function unknown function 1 88747 89088
ATI16085.1 MF974178_p112 structural protein phrog_280 virion structural protein head and packaging -1 59061 59585
ATI15991.1 MF974178_p18 hypothetical protein phrog_4261 unknown function unknown function -1 7426 7722
ATI16106.1 MF974178_p133 hypothetical protein phrog_7505 unknown function unknown function 1 74906 75091
ATI16017.1 MF974178_p44 hypothetical protein phrog_343 unknown function unknown function -1 17144 17371
ATI15986.1 MF974178_p13 hypothetical protein phrog_4261 unknown function unknown function -1 5821 6159
ATI16134.1 MF974178_p161 hypothetical protein phrog_3360 unknown function unknown function 1 88242 88745
ATI16080.1 MF974178_p107 tape measure protein phrog_991 tail length tape measure protein tail -1 54999 57365
ATI16093.1 MF974178_p120 hypothetical protein phrog_4103 unknown function unknown function -1 64349 65266
ATI16040.1 MF974178_p67 hypothetical protein phrog_7532 unknown function unknown function -1 29813 29980
ATI16000.1 MF974178_p27 hypothetical protein phrog_6265 unknown function unknown function -1 10808 10936
ATI16071.1 MF974178_p98 hypothetical protein phrog_4628 tail fiber assembly tail -1 47189 47569
ATI16089.1 MF974178_p116 hypothetical protein phrog_222 tail completion or Neck1 protein connector -1 61855 62268
ATI15993.1 MF974178_p20 hypothetical protein phrog_17859 unknown function unknown function -1 8017 8220
ATI16115.1 MF974178_p142 hypothetical protein phrog_2686 unknown function unknown function 1 78369 78830
ATI16074.1 MF974178_p101 baseplate component phrog_6 baseplate wedge subunit tail -1 50381 51844
ATI16012.1 MF974178_p39 hypothetical protein phrog_6863 unknown function unknown function -1 15897 16172
ATI16095.1 MF974178_p122 hypothetical protein phrog_113 portal protein head and packaging -1 65743 67182
ATI15987.1 MF974178_p14 hypothetical protein phrog_6091 unknown function unknown function -1 6171 6416
ATI15977.1 MF974178_p4 hypothetical protein phrog_4310 unknown function unknown function -1 2304 2498
ATI16105.1 MF974178_p132 hypothetical protein phrog_343 unknown function unknown function 1 74612 74905
ATI16122.1 MF974178_p149 hypothetical protein phrog_944 membrane protein moron, auxiliary metabolic gene and host takeover 1 81516 81923
ATI16112.1 MF974178_p139 hypothetical protein phrog_7094 unknown function unknown function 1 76508 76732
ATI16121.1 MF974178_p148 hypothetical protein phrog_2339 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 81244 81519