Genomic map of Streptomyces phage Scap1 (MF975637)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF975637
Definition
Streptomyces phage Scap1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Scapunavirus; Streptomyces virus Scap1.
DB of origin
NUCCORE
Length
43060
Host Name
Streptomyces scabiei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
60.87
Number of singletons
14
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATN93656.1 MF975637_p7 terminase phrog_9 terminase large subunit head and packaging 1 2655 4397
ATN93684.1 MF975637_p35 hypothetical protein phrog_4282 unknown function unknown function 1 26203 26724
ATN93655.1 MF975637_p6 hypothetical protein phrog_7021 unknown function unknown function 1 2256 2636
ATN93662.1 MF975637_p13 hypothetical protein phrog_4338 unknown function unknown function 1 9347 9889
ATN93680.1 MF975637_p31 hypothetical protein singleton unknown function unknown function 1 24318 24641
ATN93694.1 MF975637_p45 hypothetical protein phrog_4787 single strand annealing protein DNA, RNA and nucleotide metabolism 1 34871 35452
ATN93697.1 MF975637_p48 hypothetical protein phrog_16429 unknown function unknown function 1 36052 36345
ATN93675.1 MF975637_p26 hypothetical protein phrog_5818 unknown function unknown function 1 22702 23001
ATN93657.1 MF975637_p8 portal protein phrog_12 portal protein head and packaging 1 4417 5721
ATN93700.1 MF975637_p51 DNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 36879 38060
ATN93673.1 MF975637_p24 hypothetical protein phrog_4105 unknown function unknown function 1 21905 22297
ATN93679.1 MF975637_p30 hypothetical protein singleton unknown function unknown function 1 24113 24349
ATN93688.1 MF975637_p39 hypothetical protein phrog_2152 unknown function unknown function 1 28039 28953
ATN93661.1 MF975637_p12 major tail protein phrog_2645 major tail protein tail 1 8430 9317
ATN93674.1 MF975637_p25 holin phrog_9233 holin lysis 1 22251 22640
ATN93699.1 MF975637_p50 hypothetical protein singleton unknown function unknown function 1 36601 36876
ATN93690.1 MF975637_p41 hypothetical protein phrog_4678 unknown function unknown function 1 29656 30186
ATN93676.1 MF975637_p27 hypothetical protein singleton unknown function unknown function 1 23058 23354
ATN93687.1 MF975637_p38 hypothetical protein singleton unknown function unknown function 1 27917 28042
ATN93660.1 MF975637_p11 hypothetical protein phrog_78 tail terminator connector 1 8150 8416
ATN93704.1 MF975637_p55 helix-turn-helix DNA binding domain protein phrog_4291 RNA-dependent RNA polymerase DNA, RNA and nucleotide metabolism 1 39873 42602
ATN93654.1 MF975637_p5 hypothetical protein phrog_4247 virion structural protein head and packaging 1 1918 2286
ATN93696.1 MF975637_p47 hypothetical protein singleton unknown function unknown function 1 35844 36044
ATN93671.1 MF975637_p22 hypothetical protein phrog_9081 unknown function unknown function 1 20654 20899
ATN93667.1 MF975637_p18 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 13072 13449
ATN93652.1 MF975637_p2 HNH endonuclease phrog_4321 HNH endonuclease DNA, RNA and nucleotide metabolism 1 494 901
ATN93703.1 MF975637_p54 DNA helicase phrog_3953 exonuclease DNA, RNA and nucleotide metabolism 1 39310 39876
ATN93681.1 MF975637_p32 hypothetical protein singleton unknown function unknown function 1 24638 24841
ATN93658.1 MF975637_p9 capsid maturation protease phrog_3270 head maturation protease head and packaging 1 5699 7786
ATN93668.1 MF975637_p19 tape measure protein phrog_4372 tail length tape measure protein tail 1 13425 18671
ATN93659.1 MF975637_p10 hypothetical protein phrog_4270 unknown function unknown function 1 7801 8127
ATN93665.1 MF975637_p16 hypothetical protein phrog_30320 unknown function unknown function 1 11427 12779
ATN93685.1 MF975637_p36 hypothetical protein singleton unknown function unknown function 1 26822 27139
ATN93691.1 MF975637_p42 DNA primase/polymerase phrog_4210 DNA polymerase DNA, RNA and nucleotide metabolism 1 30201 34103
ATN93669.1 MF975637_p20 minor tail protein phrog_33 distal tail protein Dit tail 1 18655 19479
ATN93689.1 MF975637_p40 hypothetical protein phrog_4695 unknown function unknown function 1 28953 29648
ATN93683.1 MF975637_p34 hypothetical protein singleton unknown function unknown function 1 25724 26158
ATN93692.1 MF975637_p43 hypothetical protein singleton unknown function unknown function 1 34100 34243
ATN93698.1 MF975637_p49 hypothetical protein singleton unknown function unknown function 1 36356 36526
ATN93670.1 MF975637_p21 minor tail protein phrog_538 minor tail protein tail 1 19479 20642
ATN93651.1 MF975637_p1 hypothetical protein phrog_4259 unknown function unknown function 1 148 501
ATN93706.1 MF975637_p3 hypothetical protein phrog_15884 unknown function unknown function 1 912 1025
ATN93693.1 MF975637_p44 hypothetical protein phrog_918 unknown function unknown function 1 34342 34764
ATN93686.1 MF975637_p37 hypothetical protein phrog_4079 unknown function unknown function 1 27214 27906
ATN93705.1 MF975637_p56 hypothetical protein phrog_4303 unknown function unknown function 1 42607 42846
ATN93695.1 MF975637_p46 hypothetical protein singleton unknown function unknown function 1 35559 35831
ATN93701.1 MF975637_p52 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38365 38937
ATN93678.1 MF975637_p29 hypothetical protein singleton unknown function unknown function 1 23702 23995
ATN93666.1 MF975637_p17 hypothetical protein phrog_35320 unknown function unknown function 1 12788 13063
ATN93682.1 MF975637_p33 hypothetical protein phrog_2152 unknown function unknown function 1 24862 25659
ATN93653.1 MF975637_p4 endolysin phrog_16241 endolysin lysis 1 1022 1891
ATN93663.1 MF975637_p14 major tail protein phrog_2645 major tail protein tail 1 9886 10674
ATN93702.1 MF975637_p53 hydrolase phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 39048 39368
ATN93677.1 MF975637_p28 hypothetical protein singleton unknown function unknown function 1 23389 23688
ATN93664.1 MF975637_p15 hypothetical protein phrog_37250 unknown function unknown function 1 10683 11414
ATN93672.1 MF975637_p23 hydrolase phrog_6977 minor tail protein tail 1 20908 21894