| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF975637 |
Definition |
Streptomyces phage Scap1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Scapunavirus; Streptomyces virus Scap1. |
DB of origin |
NUCCORE |
Length |
43060 |
Host Name |
Streptomyces scabiei |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
60.87 |
Number of singletons |
14 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATN93656.1 | MF975637_p7 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 2655 | 4397 |
| ATN93684.1 | MF975637_p35 | hypothetical protein | phrog_4282 | unknown function | unknown function | 1 | 26203 | 26724 |
| ATN93655.1 | MF975637_p6 | hypothetical protein | phrog_7021 | unknown function | unknown function | 1 | 2256 | 2636 |
| ATN93662.1 | MF975637_p13 | hypothetical protein | phrog_4338 | unknown function | unknown function | 1 | 9347 | 9889 |
| ATN93680.1 | MF975637_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24318 | 24641 |
| ATN93694.1 | MF975637_p45 | hypothetical protein | phrog_4787 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 34871 | 35452 |
| ATN93697.1 | MF975637_p48 | hypothetical protein | phrog_16429 | unknown function | unknown function | 1 | 36052 | 36345 |
| ATN93675.1 | MF975637_p26 | hypothetical protein | phrog_5818 | unknown function | unknown function | 1 | 22702 | 23001 |
| ATN93657.1 | MF975637_p8 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4417 | 5721 |
| ATN93700.1 | MF975637_p51 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 36879 | 38060 |
| ATN93673.1 | MF975637_p24 | hypothetical protein | phrog_4105 | unknown function | unknown function | 1 | 21905 | 22297 |
| ATN93679.1 | MF975637_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24113 | 24349 |
| ATN93688.1 | MF975637_p39 | hypothetical protein | phrog_2152 | unknown function | unknown function | 1 | 28039 | 28953 |
| ATN93661.1 | MF975637_p12 | major tail protein | phrog_2645 | major tail protein | tail | 1 | 8430 | 9317 |
| ATN93674.1 | MF975637_p25 | holin | phrog_9233 | holin | lysis | 1 | 22251 | 22640 |
| ATN93699.1 | MF975637_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36601 | 36876 |
| ATN93690.1 | MF975637_p41 | hypothetical protein | phrog_4678 | unknown function | unknown function | 1 | 29656 | 30186 |
| ATN93676.1 | MF975637_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23058 | 23354 |
| ATN93687.1 | MF975637_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27917 | 28042 |
| ATN93660.1 | MF975637_p11 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 8150 | 8416 |
| ATN93704.1 | MF975637_p55 | helix-turn-helix DNA binding domain protein | phrog_4291 | RNA-dependent RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 39873 | 42602 |
| ATN93654.1 | MF975637_p5 | hypothetical protein | phrog_4247 | virion structural protein | head and packaging | 1 | 1918 | 2286 |
| ATN93696.1 | MF975637_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35844 | 36044 |
| ATN93671.1 | MF975637_p22 | hypothetical protein | phrog_9081 | unknown function | unknown function | 1 | 20654 | 20899 |
| ATN93667.1 | MF975637_p18 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 13072 | 13449 |
| ATN93652.1 | MF975637_p2 | HNH endonuclease | phrog_4321 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 494 | 901 |
| ATN93703.1 | MF975637_p54 | DNA helicase | phrog_3953 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 39310 | 39876 |
| ATN93681.1 | MF975637_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24638 | 24841 |
| ATN93658.1 | MF975637_p9 | capsid maturation protease | phrog_3270 | head maturation protease | head and packaging | 1 | 5699 | 7786 |
| ATN93668.1 | MF975637_p19 | tape measure protein | phrog_4372 | tail length tape measure protein | tail | 1 | 13425 | 18671 |
| ATN93659.1 | MF975637_p10 | hypothetical protein | phrog_4270 | unknown function | unknown function | 1 | 7801 | 8127 |
| ATN93665.1 | MF975637_p16 | hypothetical protein | phrog_30320 | unknown function | unknown function | 1 | 11427 | 12779 |
| ATN93685.1 | MF975637_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26822 | 27139 |
| ATN93691.1 | MF975637_p42 | DNA primase/polymerase | phrog_4210 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 30201 | 34103 |
| ATN93669.1 | MF975637_p20 | minor tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 18655 | 19479 |
| ATN93689.1 | MF975637_p40 | hypothetical protein | phrog_4695 | unknown function | unknown function | 1 | 28953 | 29648 |
| ATN93683.1 | MF975637_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25724 | 26158 |
| ATN93692.1 | MF975637_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34100 | 34243 |
| ATN93698.1 | MF975637_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36356 | 36526 |
| ATN93670.1 | MF975637_p21 | minor tail protein | phrog_538 | minor tail protein | tail | 1 | 19479 | 20642 |
| ATN93651.1 | MF975637_p1 | hypothetical protein | phrog_4259 | unknown function | unknown function | 1 | 148 | 501 |
| ATN93706.1 | MF975637_p3 | hypothetical protein | phrog_15884 | unknown function | unknown function | 1 | 912 | 1025 |
| ATN93693.1 | MF975637_p44 | hypothetical protein | phrog_918 | unknown function | unknown function | 1 | 34342 | 34764 |
| ATN93686.1 | MF975637_p37 | hypothetical protein | phrog_4079 | unknown function | unknown function | 1 | 27214 | 27906 |
| ATN93705.1 | MF975637_p56 | hypothetical protein | phrog_4303 | unknown function | unknown function | 1 | 42607 | 42846 |
| ATN93695.1 | MF975637_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35559 | 35831 |
| ATN93701.1 | MF975637_p52 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38365 | 38937 |
| ATN93678.1 | MF975637_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23702 | 23995 |
| ATN93666.1 | MF975637_p17 | hypothetical protein | phrog_35320 | unknown function | unknown function | 1 | 12788 | 13063 |
| ATN93682.1 | MF975637_p33 | hypothetical protein | phrog_2152 | unknown function | unknown function | 1 | 24862 | 25659 |
| ATN93653.1 | MF975637_p4 | endolysin | phrog_16241 | endolysin | lysis | 1 | 1022 | 1891 |
| ATN93663.1 | MF975637_p14 | major tail protein | phrog_2645 | major tail protein | tail | 1 | 9886 | 10674 |
| ATN93702.1 | MF975637_p53 | hydrolase | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39048 | 39368 |
| ATN93677.1 | MF975637_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23389 | 23688 |
| ATN93664.1 | MF975637_p15 | hypothetical protein | phrog_37250 | unknown function | unknown function | 1 | 10683 | 11414 |
| ATN93672.1 | MF975637_p23 | hydrolase | phrog_6977 | minor tail protein | tail | 1 | 20908 | 21894 |