Genomic map of Pseudomonas phage VW-6S (MF975720)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF975720
Definition
Pseudomonas phage VW-6S, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
37917
Host Name
Pseudomonas fluorescens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
56.9
Number of singletons
6
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATN93574.1 MF975720_p22 hypothetical protein singleton unknown function unknown function -1 12891 13463
ATN93581.1 MF975720_p29 hypothetical protein phrog_3370 unknown function unknown function -1 16948 17604
ATN93571.1 MF975720_p19 hypothetical protein phrog_12397 unknown function unknown function 1 10429 10644
ATN93589.1 MF975720_p37 hypothetical protein singleton unknown function unknown function -1 28039 28962
ATN93560.1 MF975720_p8 nuclease phrog_824 unknown function unknown function -1 3703 4134
ATN93601.1 MF975720_p49 portal protein phrog_12 portal protein head and packaging -1 34192 35403
ATN93572.1 MF975720_p20 hypothetical protein phrog_2707 unknown function unknown function -1 10697 11008
ATN93596.1 MF975720_p44 head-tail joining protein phrog_25 head closure Hc1 connector -1 31245 31544
ATN93558.1 MF975720_p6 hypothetical protein phrog_17107 unknown function unknown function -1 2191 2409
ATN93553.1 MF975720_p1 5-methylcytosine-specific restriction endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism -1 86 481
ATN93577.1 MF975720_p25 cell wall hydrolase, endolysin phrog_938 endolysin lysis -1 14678 15157
ATN93575.1 MF975720_p23 defense against restriction protein A singleton unknown function unknown function 1 13835 14194
ATN93602.1 MF975720_p50 hypothetical protein phrog_7105 unknown function unknown function -1 35403 35594
ATN93576.1 MF975720_p24 Rz protein phrog_312 Rz-like spanin lysis -1 14175 14678
ATN93578.1 MF975720_p26 N-acetyltransferase phrog_4912 tail fiber assembly tail -1 15161 15370
ATN93591.1 MF975720_p39 hypothetical protein phrog_6454 unknown function unknown function -1 29257 29586
ATN93586.1 MF975720_p34 minor tail protein phrog_18 minor tail protein tail -1 23415 24119
ATN93570.1 MF975720_p18 hypothetical protein phrog_4575 unknown function unknown function 1 9754 10350
ATN93566.1 MF975720_p14 Cro/Cl family transcriptional regulator phrog_35 transcriptional repressor transcription regulation -1 7261 7515
ATN93569.1 MF975720_p17 integrase singleton unknown function unknown function 1 9611 9751
ATN93557.1 MF975720_p5 hypothetical protein phrog_5085 unknown function unknown function -1 1877 2194
ATN93593.1 MF975720_p41 tail protein phrog_176 tail terminator connector -1 30179 30565
ATN93554.1 MF975720_p2 holin phrog_126 holin/anti-holin lysis -1 483 812
ATN93592.1 MF975720_p40 tail tube protein phrog_158 major tail protein tail -1 29626 30123
ATN93556.1 MF975720_p4 antitermination protein Q phrog_79 anti-termination protein Q-like transcription regulation -1 1520 1873
ATN93573.1 MF975720_p21 integrase phrog_1 integrase integration and excision 1 11497 12672
ATN93559.1 MF975720_p7 integrase phrog_1 integrase integration and excision -1 2426 3706
ATN93599.1 MF975720_p47 major capsid protein phrog_10 major head protein head and packaging -1 32339 33544
ATN93587.1 MF975720_p35 minor tail protein phrog_14 minor tail protein tail -1 24168 24530
ATN93600.1 MF975720_p48 prohead protease phrog_80 head maturation protease head and packaging -1 33555 34214
ATN93561.1 MF975720_p9 hypothetical protein phrog_131 HNH endonuclease DNA, RNA and nucleotide metabolism -1 4131 4427
ATN93583.1 MF975720_p31 hypothetical protein singleton unknown function unknown function 1 21763 22053
ATN93597.1 MF975720_p45 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector -1 31574 31891
ATN93594.1 MF975720_p42 hypothetical protein phrog_5 tail completion or Neck1 protein connector -1 30558 31061
ATN93579.1 MF975720_p27 tail fiber assembly protein phrog_2398 unknown function unknown function -1 15351 15734
ATN93604.1 MF975720_p52 terminase small subunit phrog_83 terminase small subunit head and packaging -1 37318 37803
ATN93584.1 MF975720_p32 tail assembly protein I phrog_32 tail assembly protein tail -1 22040 22633
ATN93595.1 MF975720_p43 capsid maturation protease phrog_2616 unknown function unknown function -1 31065 31235
ATN93564.1 MF975720_p12 antirepressor protein KilAC domain protein phrog_63 anti-repressor Ant transcription regulation -1 5946 6686
ATN93562.1 MF975720_p10 replication protein P phrog_109 P-like helicase loader DNA, RNA and nucleotide metabolism -1 4424 5197
ATN93598.1 MF975720_p46 HeH/LEM domain protein phrog_1539 Arc-like repressor transcription regulation -1 31884 32297
ATN93568.1 MF975720_p16 hypothetical protein phrog_5464 unknown function unknown function 1 8803 9441
ATN93582.1 MF975720_p30 tail fiber protein phrog_31 central tail fiber J tail -1 17939 21568
ATN93555.1 MF975720_p3 restriction-modification system adenine methylase phrog_66 excisionase and transcriptional regulator integration and excision 1 1159 1479
ATN93565.1 MF975720_p13 regulatory protein CII phrog_101 CII-like transcriptional activator transcription regulation -1 6756 7178
ATN93590.1 MF975720_p38 hypothetical protein singleton unknown function unknown function -1 29006 29164
ATN93563.1 MF975720_p11 replication protein phrog_2509 replication initiation protein DNA, RNA and nucleotide metabolism -1 5194 5946
ATN93567.1 MF975720_p15 CI repressor phrog_4 transcriptional repressor transcription regulation 1 7611 8471
ATN93603.1 MF975720_p51 terminase large subunit phrog_9 terminase large subunit head and packaging -1 35591 37318
ATN93580.1 MF975720_p28 tail fiber domain protein phrog_2712 tail fiber protein tail -1 15731 16882
ATN93588.1 MF975720_p36 tail tape-measure protein phrog_339 tail length tape measure protein tail -1 24518 27955
ATN93585.1 MF975720_p33 tail assembly protein phrog_30 minor tail protein tail -1 22630 23412