Genomic map of Pseudomonas phage VW-6B (MF975721)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF975721
Definition
Pseudomonas phage VW-6B, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
35306
Host Name
Pseudomonas fluorescens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
46
%GC
56.75
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATN93623.1 MF975721_p19 hypothetical protein phrog_1322 membrane protein moron, auxiliary metabolic gene and host takeover 1 9689 9973
ATN93610.1 MF975721_p6 hypothetical protein phrog_846 unknown function unknown function 1 4266 4895
ATN93635.1 MF975721_p31 major capsid protein phrog_371 major head protein head and packaging 1 18788 19714
ATN93633.1 MF975721_p29 virion morphogenesis protein phrog_26 tail completion or Neck1 protein connector 1 16866 17447
ATN93614.1 MF975721_p10 hypothetical protein phrog_30383 unknown function unknown function 1 5800 6264
ATN93649.1 MF975721_p45 tail fiber protein phrog_4201 tail fiber protein tail 1 32133 34271
ATN93632.1 MF975721_p28 head morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 15634 16866
ATN93609.1 MF975721_p5 kil protein phrog_2743 Kil protein for bacterial septation inhibition other 1 3994 4227
ATN93619.1 MF975721_p15 hypothetical protein phrog_1690 unknown function unknown function 1 7886 8083
ATN93621.1 MF975721_p17 Mor transcription activator family protein phrog_836 late transcriptional activator transcription regulation 1 8499 8948
ATN93617.1 MF975721_p13 hypothetical protein phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other 1 6905 7669
ATN93636.1 MF975721_p32 prohead protease singleton unknown function unknown function 1 19774 20388
ATN93624.1 MF975721_p20 Rz protein phrog_1403 Rz-like spanin lysis 1 9945 10565
ATN93607.1 MF975721_p3 transposase phrog_310 transposase integration and excision 1 1009 3072
ATN93605.1 MF975721_p1 C repressor phrog_3037 transcriptional repressor transcription regulation -1 54 599
ATN93618.1 MF975721_p14 streptogramin lyase phrog_19503 unknown function unknown function 1 7666 7905
ATN93613.1 MF975721_p9 hypothetical protein phrog_2314 unknown function unknown function 1 5289 5810
ATN93630.1 MF975721_p26 terminase large subunit phrog_38 terminase large subunit head and packaging 1 12330 14114
ATN93647.1 MF975721_p43 tail protein phrog_1101 tail protein tail 1 29034 31319
ATN93644.1 MF975721_p40 tail protein phrog_778 tail assembly protein tail 1 27761 28576
ATN93616.1 MF975721_p12 hypothetical protein phrog_9400 unknown function unknown function 1 6684 6908
ATN93612.1 MF975721_p8 holin protein singleton unknown function unknown function 1 5176 5292
ATN93648.1 MF975721_p44 tail sheath protein phrog_807 major tail protein with Ig-like domain tail 1 31331 32128
ATN93606.1 MF975721_p2 DNA-binding protein phrog_769 transcriptional repressor transcription regulation 1 761 1012
ATN93642.1 MF975721_p38 tail length tape-measure protein phrog_2335 tail length tape measure protein tail 1 22886 26602
ATN93639.1 MF975721_p35 virion structural protein phrog_3129 unknown function unknown function 1 21271 21465
ATN93650.1 MF975721_p46 hypothetical protein phrog_28256 unknown function unknown function 1 34281 35201
ATN93638.1 MF975721_p34 virion structural protein phrog_209 portal protein head and packaging 1 20807 21274
ATN93625.1 MF975721_p21 type I site-specific deoxyribonuclease, HsdR family phrog_462 lipoprotein other 1 10562 10810
ATN93645.1 MF975721_p41 tail protein phrog_1180 tail assembly chaperone tail 1 28587 28820
ATN93640.1 MF975721_p36 tail sheath protein phrog_807 major tail protein with Ig-like domain tail 1 21465 22211
ATN93620.1 MF975721_p16 GemA protein phrog_286 unknown function unknown function 1 8080 8502
ATN93629.1 MF975721_p25 ATP-dependent chaperone phrog_1244 unknown function unknown function -1 11742 12248
ATN93615.1 MF975721_p11 hypothetical protein phrog_4790 host RecBCD nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 6261 6683
ATN93641.1 MF975721_p37 hypothetical protein phrog_1442 tail assembly chaperone tail 1 22211 22684
ATN93631.1 MF975721_p27 hypothetical protein phrog_113 portal protein head and packaging 1 14108 15634
ATN93626.1 MF975721_p22 hypothetical protein phrog_1103 unknown function unknown function 1 10813 11040
ATN93608.1 MF975721_p4 DNA transposition protein phrog_296 DNA transposition protein integration and excision 1 3085 3981
ATN93622.1 MF975721_p18 lysozyme phrog_181 endolysin lysis 1 9102 9701
ATN93627.1 MF975721_p23 DNA-binding protein phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 11040 11543
ATN93611.1 MF975721_p7 hypothetical protein phrog_5591 unknown function unknown function 1 4897 5094
ATN93637.1 MF975721_p33 hypothetical protein phrog_195 head-tail adaptor connector 1 20391 20813
ATN93634.1 MF975721_p30 hypothetical protein phrog_328 head maturation protease head and packaging 1 17655 18788
ATN93646.1 MF975721_p42 tail protein phrog_1196 tail assembly chaperone tail 1 28831 29034
ATN93628.1 MF975721_p24 hypothetical protein phrog_19649 unknown function unknown function 1 11545 11745
ATN93643.1 MF975721_p39 tail protein phrog_1082 tail assembly protein tail 1 26599 27774